View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3597_high_4 (Length: 607)
Name: NF3597_high_4
Description: NF3597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3597_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 23 - 405
Target Start/End: Complemental strand, 21787967 - 21787608
Alignment:
| Q |
23 |
tctatgtcgagaggattaatggatgtaatcacatgatgtgcaggttaattaattatgcattttatcatcttttgttcacatatttacattaattaa-ttt |
121 |
Q |
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| T |
21787967 |
tctatgtcgagagaattaatggatgtaatcacatgatgtgcaggttaatta----tgcattttatcatcttttgttcacatatttacattaattaaattt |
21787872 |
T |
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| Q |
122 |
atgtctaactatataattattctttctaggtgtggatgtgacttctgctacaactgtgggtcaggcatacggaataaaatgtgtggatgttcttcataaa |
221 |
Q |
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| T |
21787871 |
atgtctaactatataattattctttctaggtgtggatgtgacttctgctacaactgtgggtcaggcttacggaaaaaaatgtgtgg-------------- |
21787786 |
T |
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| Q |
222 |
atgtcgatgtgactaactatatttagaccgggttcatatatgccatannnnnnnagaggtaattcttttcaggtagaaaaaattatagcaatgacttgaa |
321 |
Q |
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| T |
21787785 |
------atgtgactaactatttttagaccgggttcatatatgccatatttttttagaggtaattcttttcaggtagaaaaaattatagcaatgacttgaa |
21787692 |
T |
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| Q |
322 |
ataaagtcttttgacattgatgatgattaattttgctcttttaattcatttatatgcacagcaactttgtttccactcctcatg |
405 |
Q |
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| T |
21787691 |
ataaagtcttttgacattgatgatgattaattttgcacttttaattcattgatatgcacagcaactttgtttccactcctcatg |
21787608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 21794673 - 21794511
Alignment:
| Q |
20 |
ctatctatgtcgagaggattaatggatgtaatcacatgatgtgcaggttaattaattatgcattttatcatcttttgttcacatattt--acattaatt- |
116 |
Q |
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| T |
21794673 |
ctatctatgtcgagagaattaatggatgtaatcacatgatgtgcaggttaattaattatgcattttatcatctcttgttcacatattttagcattaatta |
21794574 |
T |
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| Q |
117 |
aatttatgtctaactatataattattctttctaggtgtggatgtgacttctgctacaactgtggg |
181 |
Q |
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| T |
21794573 |
aatttatgtctaac--tataatttttctttctaggtgtggaagtgacttctgctacaaatgtggg |
21794511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 460
Target Start/End: Complemental strand, 21794412 - 21794332
Alignment:
| Q |
381 |
agcaactttgtttccactcctcatgtcaatta-ggtttttcaaatagtcaacagaattctctggattggaatgcttgtttc |
460 |
Q |
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| T |
21794412 |
agcaacgttgtttcaactcctcatgtcaattagggtttcgcaagaagttaacagaattctttggataggaattattgtttc |
21794332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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