View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3597_high_5 (Length: 572)

Name: NF3597_high_5
Description: NF3597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3597_high_5
NF3597_high_5
[»] chr1 (9 HSPs)
chr1 (1-339)||(47583846-47584184)
chr1 (319-567)||(47583584-47583832)
chr1 (75-298)||(47574170-47574393)
chr1 (352-549)||(47573909-47574106)
chr1 (79-298)||(47567290-47567504)
chr1 (342-567)||(47567004-47567229)
chr1 (73-192)||(47626901-47627020)
chr1 (75-234)||(47698011-47698170)
chr1 (357-400)||(47592472-47592515)
[»] chr6 (9 HSPs)
chr6 (76-195)||(20236379-20236498)
chr6 (76-195)||(22206507-22206626)
chr6 (73-276)||(22086440-22086643)
chr6 (73-276)||(21968547-21968750)
chr6 (76-195)||(22130363-22130482)
chr6 (76-195)||(18996058-18996177)
chr6 (76-129)||(18979956-18980009)
chr6 (76-129)||(20084252-20084305)
chr6 (76-195)||(24386637-24386757)
[»] scaffold0074 (1 HSPs)
scaffold0074 (76-195)||(49282-49401)
[»] scaffold0007 (1 HSPs)
scaffold0007 (76-195)||(6828-6947)
[»] chr8 (1 HSPs)
chr8 (76-192)||(10401925-10402041)
[»] chr5 (1 HSPs)
chr5 (75-195)||(470366-470486)
[»] chr3 (1 HSPs)
chr3 (149-195)||(36067430-36067476)
[»] chr4 (1 HSPs)
chr4 (164-220)||(36370099-36370155)


Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 47584184 - 47583846
Alignment:
Q  1 gagttcaaataagaacggatccacaaaaggtaattcatttatcaagacatctagtttaaagtttagaaatgacataccaaatagaaagtaatcaagactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47584184 gagttcaaataagaacggatccacaaaaggtaattcatttatcaagacatctagtttaaagtttagaaatgacataccaaatagaaagtaatcaagactt 47584085  T
Q  101 ttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagatttctgtgttgaagcttggctataactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47584084 ttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagatttctgtgttgaagcttggctataactt 47583985  T
Q  201 gaacctcatttttaaactctactgcaccttgtccagagcttcttgtaagcctcttcacagcaacttcttgtccatccaaaagaactccctgaataacaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47583984 gaacctcatttttaaactctactgcaccttgtccagagcttcttgtaagcctcttcacagcaacttcttgtccatccaaaagaactccctgaataacaat 47583885  T
Q  301 nnnnnnngtcattatggactagattattgtttaatctag 339  Q
           ||| ||||||||||||||||||||||||||||    
T  47583884 aaaaaaagtcgttatggactagattattgtttaatctag 47583846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 319 - 567
Target Start/End: Complemental strand, 47583832 - 47583584
Alignment:
Q  319 ctagattattgtttaatctagtcctagttgatttatttaccttgtagacttctccaaatccacctttgcctatcctgttttctgcagcaaatctgtttgt 418  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47583832 ctagattattgtttaatctagtccttgttgatttatttaccttgtagacttctccaaatccacctttgcctatcctgttttctgcagcaaatctgtttgt 47583733  T
Q  419 tgctgcttcaattttggcaaattcaaattgtaacgattccaaagtggtaacatcatttccaactacaacaacacgtttgaattctataagttatatggct 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47583732 tgctgcttcaattttggcaaattcaaattgtaacgattccaaagtggtaacatcatttccaactacaacaacacgtttgaattctataagttatatggct 47583633  T
Q  519 aaaagaaatgcctctttttatatgcaaatagtagtatattcttcgacat 567  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  47583632 aaaagaaatgcctctttttatatgcaaatagtagtatatttttccacat 47583584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 75 - 298
Target Start/End: Complemental strand, 47574393 - 47574170
Alignment:
Q  75 taccaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagatt 174  Q
    ||||||||| ||||||||||||||| ||||| |||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  47574393 taccaaataaaaagtaatcaagactcttgtttggcacatactcaaagattagtatcttctcctcatcttccaaacaaaatcctagtaatcttactagatt 47574294  T
Q  175 tctgtgttgaagcttggctataacttgaacctcatttttaaactctactgcaccttgtccagagcttcttgtaagcctcttcacagcaacttcttgtcca 274  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||| ||||||||||    
T  47574293 tctgtgttgaagcttggctataacatgaacctcatttttaaactctactgcaccttgcccggagctacttgtaagcctcttcaccgcaatttcttgtcca 47574194  T
Q  275 tccaaaagaactccctgaataaca 298  Q
    |||||||||| |||||||| ||||    
T  47574193 tccaaaagaattccctgaacaaca 47574170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 352 - 549
Target Start/End: Complemental strand, 47574106 - 47573909
Alignment:
Q  352 tatttaccttgtagacttctccaaatccacctttgcctatcctgttttctgcagcaaatctgtttgttgctgcttcaattttggcaaattcaaattgtaa 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  47574106 tatttaccttgtagacttctccaaatccacctttgcctatcctgttatctgcagcaaatctgtttgttgctgcttcaatttcggcaaattcaaattgcaa 47574007  T
Q  452 cgattccaaagtggtaacatcatttccaactacaacaacacgtttgaattctataagttatatggctaaaagaaatgcctctttttatatgcaaatag 549  Q
     |||||||||| | |||  ||||| |||||||||  |||| |||| ||||||||||||||||||| |||| ||||||| ||||||| | |||||||||    
T  47574006 ggattccaaagagttaatgtcattcccaactacagaaacaagttttaattctataagttatatggttaaaggaaatgcatctttttgtttgcaaatag 47573909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 79 - 298
Target Start/End: Complemental strand, 47567504 - 47567290
Alignment:
Q  79 aaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagatttctg 178  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||   |||||||||| || ||||||||||||||||||||| |||     
T  47567504 aaataaaaagtaatcaagactcttgtttggcacatactcatagataagtatcttctc---atcttccaaataatatcctagtaatctcactagatgtcta 47567408  T
Q  179 tgttgaagcttggctataacttgaacctcatttttaaactctactgcaccttgtccagagcttcttgtaagcctcttcacagcaacttcttgtccatcca 278  Q
    ||||||||||||||||||||  ||||||||||||| ||||||  ||||||||| || |||||| | ||||| |||||| |||||| ||||||||||||||    
T  47567407 tgttgaagcttggctataacaagaacctcattttt-aactctgttgcaccttg-ccggagcttttcgtaagtctcttcgcagcaatttcttgtccatcca 47567310  T
Q  279 aaagaactccctgaataaca 298  Q
    |||||| |||||||| ||||    
T  47567309 aaagaattccctgaacaaca 47567290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 342 - 567
Target Start/End: Complemental strand, 47567229 - 47567004
Alignment:
Q  342 ctagttgatttatttaccttgtagacttctccaaatccacctttgcctatcctgttttctgcagcaaatctgtttgttgctgcttcaattttggcaaatt 441  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||  || ||||| | ||    
T  47567229 ctagttgatatatttaccttgtagacttctccaaatccacctttgcctttcctattttctgcagtaaatctgtttgttgctgcttggatattggctagtt 47567130  T
Q  442 caaattgtaacgattccaaagtggtaacatcatttccaactacaacaacacgtttgaattctataagttatatggctaaaagaaatgcctctttttatat 541  Q
    ||||||| || || ||||||| |||   |||||| |||||||||||||||  |||||||||||||||||| |||| |||| ||||||| || |||| | |    
T  47567129 caaattgcaaggactccaaagaggtcgtatcattcccaactacaacaacaattttgaattctataagttacatggttaaaggaaatgcttccttttgttt 47567030  T
Q  542 gcaaatagtagtatattcttcgacat 567  Q
    |||||||| |||||||| ||| ||||    
T  47567029 gcaaatagaagtatatttttctacat 47567004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 47627020 - 47626901
Alignment:
Q  73 cataccaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactaga 172  Q
    |||||||||||| |||| ||||||||||||||| |||||||| |||||||  |||||||| ||||  ||||| |  |||||||||| ||| ||||||| |    
T  47627020 cataccaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaaa 47626921  T
Q  173 tttctgtgttgaagcttggc 192  Q
    |||||||||||||| |||||    
T  47626920 tttctgtgttgaagtttggc 47626901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 75 - 234
Target Start/End: Complemental strand, 47698170 - 47698011
Alignment:
Q  75 taccaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagatt 174  Q
    ||||||||||||||||||| ||||| ||||| | |||||| ||||| || || || |||||||   ||||||| ||||| |||| |||  |||| | |||    
T  47698170 taccaaatagaaagtaatcgagactcttgttggtcacatattcataaatgagcattttctcttggccttccaagcaaaaacctattaaagtcaccaaatt 47698071  T
Q  175 tctgtgttgaagcttggctataacttgaacctcatttttaaactctactgcaccttgtcc 234  Q
    ||| |||||||| ||||||||  ||  |||||||||||| |||||||||| |||||||||    
T  47698070 tctatgttgaagtttggctatctctaaaacctcatttttgaactctactgaaccttgtcc 47698011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 400
Target Start/End: Complemental strand, 47592515 - 47592472
Alignment:
Q  357 accttgtagacttctccaaatccacctttgcctatcctgttttc 400  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||    
T  47592515 accttgtaaacttctccaaatccacctttgccaatcttgttttc 47592472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 20236379 - 20236498
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagattt 175  Q
    |||||||||||||||||||||||| ||||| |||||| | ||||| |||||||| |||||||  ||||| |  |||||||| |  |||  ||||||||||    
T  20236379 accaaatagaaagtaatcaagactcttgttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaatccaataaatgccactagattt 20236478  T
Q  176 ctgtgttgaagcttggctat 195  Q
    || |||||||||||||||||    
T  20236479 ctatgttgaagcttggctat 20236498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 22206626 - 22206507
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagattt 175  Q
    |||||||||||||||||||||||| ||||| |||||| | ||||| |||||||| |||||||  ||||| |  |||||||| |  |||  ||||||||||    
T  22206626 accaaatagaaagtaatcaagactcttgttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaatccaataaatgccactagattt 22206527  T
Q  176 ctgtgttgaagcttggctat 195  Q
    || |||||||||||||||||    
T  22206526 ctatgttgaagcttggctat 22206507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 73 - 276
Target Start/End: Original strand, 22086440 - 22086643
Alignment:
Q  73 cataccaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactaga 172  Q
    ||||||||||| ||||||||||||||||||||| |  ||||| ||||| |||||||||||||| |   |||| |  ||||| || |  ||| | ||||||    
T  22086440 cataccaaataaaaagtaatcaagacttttgttggaaacatattcataaataagtatcttctcatgtccttcaaggcaaaaaccaataaatgtgactaga 22086539  T
Q  173 tttctgtgttgaagcttggctataacttgaacctcatttttaaactctactgcaccttgtccagagcttcttgtaagcctcttcacagcaacttcttgtc 272  Q
    ||||||||||||||||||||||| | |  ||  ||||| || |||||  || |||||||   ||| ||||||| ||||||||| | ||| |||||| |||    
T  22086540 tttctgtgttgaagcttggctatcaataaaatttcattcttgaactcctctacaccttgcttagaacttcttgaaagcctctttatagctacttctcgtc 22086639  T
Q  273 catc 276  Q
    ||||    
T  22086640 catc 22086643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 73 - 276
Target Start/End: Original strand, 21968547 - 21968750
Alignment:
Q  73 cataccaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactaga 172  Q
    ||||||||||| ||||||||||||||| ||||| |  ||||| ||||| |||||||||||||| |   |||| | |||||| || |  ||  ||||||||    
T  21968547 cataccaaataaaaagtaatcaagactcttgttggaaacatattcataaataagtatcttctcatgtccttcaagacaaaagccaataaaagtcactaga 21968646  T
Q  173 tttctgtgttgaagcttggctataacttgaacctcatttttaaactctactgcaccttgtccagagcttcttgtaagcctcttcacagcaacttcttgtc 272  Q
    ||||| ||||||||||||||||| | |  ||  ||||| || |||||  || |||||||   ||| ||||||| ||||||||| | ||| |||||| |||    
T  21968647 tttctatgttgaagcttggctatcaataaaatttcattcttgaactcctctacaccttgcttagaacttcttgaaagcctctttatagctacttctcgtc 21968746  T
Q  273 catc 276  Q
    ||||    
T  21968747 catc 21968750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 22130363 - 22130482
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagattt 175  Q
    |||||||||||||||||||||||| ||||| |||||| | ||||| |||||||| |||||||  ||||| |  ||||| || |  ||   ||||||||||    
T  22130363 accaaatagaaagtaatcaagactcttgttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaaaccaaaaaaagccactagattt 22130462  T
Q  176 ctgtgttgaagcttggctat 195  Q
    || |||||||||||||||||    
T  22130463 ctatgttgaagcttggctat 22130482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 18996058 - 18996177
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagattt 175  Q
    ||||||||||||| |||||||||| | ||| |||||| | ||||| |||||||| |||||||  ||||| |  ||||| || |  |||  ||||||||||    
T  18996058 accaaatagaaagaaatcaagactatagttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaaaccaataaatgccactagattt 18996157  T
Q  176 ctgtgttgaagcttggctat 195  Q
    || |||||||||||||||||    
T  18996158 ctatgttgaagcttggctat 18996177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 18979956 - 18980009
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtat 129  Q
    ||||||||||||| |||||||||||||||| |||||||| ||||| ||||||||    
T  18979956 accaaatagaaagaaatcaagacttttgtttggcacatattcataaataagtat 18980009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 20084252 - 20084305
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtat 129  Q
    ||||||||||||| |||||||||||||||| |||||||| ||||| ||||||||    
T  20084252 accaaatagaaagaaatcaagacttttgtttggcacatattcataaataagtat 20084305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 24386757 - 24386637
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcat-agataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagatt 174  Q
    ||||||||||||| |||||||||||||||| |||||||| | || | |||||||| |||||||  ||||| |  ||||| || |  ||    ||||||||    
T  24386757 accaaatagaaagaaatcaagacttttgtttggcacatatttataaaataagtattttctcttgttcttcaaggcaaaaaccaataaaagcaactagatt 24386658  T
Q  175 tctgtgttgaagcttggctat 195  Q
    ||| |||||||||||||||||    
T  24386657 tctatgttgaagcttggctat 24386637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 49401 - 49282
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagattt 175  Q
    ||||||||||||| |||||||||||||||| |||||| | ||||| |||||||| |||||||  ||||| |  ||||| || |  |||  ||||||||||    
T  49401 accaaatagaaagaaatcaagacttttgttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaaaccaataaatgccactagattt 49302  T
Q  176 ctgtgttgaagcttggctat 195  Q
    || |||||||||||||||||    
T  49301 ctatgttgaagcttggctat 49282  T

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Target: scaffold0007 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 6947 - 6828
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagattt 175  Q
    ||||||||||||| |||||||||||||||| |||||| | ||||| |||||||| |||||||  ||||| |  ||||| || |  |||  ||||||||||    
T  6947 accaaatagaaagaaatcaagacttttgttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaaaccaataaatgccactagattt 6848  T
Q  176 ctgtgttgaagcttggctat 195  Q
    || |||||||||||||||||    
T  6847 ctatgttgaagcttggctat 6828  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 10401925 - 10402041
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagattt 175  Q
    |||||||| ||||| ||||||||| |||||||||||||| ||||| |||||||| ||||| || ||||| |  ||||| || |  ||| | |||||||||    
T  10401925 accaaataaaaagtgatcaagactcttgttcggcacatattcatatataagtattttctcctcttcttcaaggcaaaagccgatgaatgtgactagattt 10402024  T
Q  176 ctgtgttgaagcttggc 192  Q
    || ||||||||||||||    
T  10402025 ctatgttgaagcttggc 10402041  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 470366 - 470486
Alignment:
Q  75 taccaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagatt 174  Q
    |||||||||| || ||||||||||| || || |||||||| ||||| ||||| || || |||   |||||||| || |||||||||||  |||| | |||    
T  470366 taccaaataggaaataatcaagactcttattaggcacatattcatatataagcattttttctcgttcttccaagcagaatcctagtaaagtcaccaaatt 470465  T
Q  175 tctgtgttgaagcttggctat 195  Q
    ||| |||||||||||||||||    
T  470466 tctatgttgaagcttggctat 470486  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 36067430 - 36067476
Alignment:
Q  149 caaaatcctagtaatctcactagatttctgtgttgaagcttggctat 195  Q
    ||||||||||  |||||||| ||||||||||||||||||||||||||    
T  36067430 caaaatcctaacaatctcacaagatttctgtgttgaagcttggctat 36067476  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 36370155 - 36370099
Alignment:
Q  164 ctcactagatttctgtgttgaagcttggctataacttgaacctcatttttaaactct 220  Q
    ||||||||||||||||||||||| ||| ||| || || ||| |||||||||||||||    
T  36370155 ctcactagatttctgtgttgaagtttgactaaaagtttaacttcatttttaaactct 36370099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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