View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3597_high_8 (Length: 431)

Name: NF3597_high_8
Description: NF3597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3597_high_8
NF3597_high_8
[»] chr8 (3 HSPs)
chr8 (110-398)||(45163755-45164040)
chr8 (110-211)||(24948543-24948643)
chr8 (11-51)||(30473881-30473921)
[»] chr4 (5 HSPs)
chr4 (111-220)||(40835481-40835590)
chr4 (113-213)||(29888744-29888843)
chr4 (113-193)||(40608233-40608313)
chr4 (110-201)||(11669628-11669718)
chr4 (1-49)||(26724126-26724174)
[»] chr5 (4 HSPs)
chr5 (114-208)||(38256918-38257012)
chr5 (125-209)||(1054225-1054309)
chr5 (110-213)||(14536129-14536232)
chr5 (110-142)||(29302481-29302513)
[»] chr6 (2 HSPs)
chr6 (241-349)||(24124347-24124455)
chr6 (11-48)||(15044914-15044951)
[»] chr2 (5 HSPs)
chr2 (113-203)||(13567699-13567789)
chr2 (152-215)||(14438927-14438990)
chr2 (111-202)||(30856636-30856725)
chr2 (1-48)||(2988903-2988950)
chr2 (110-157)||(40298793-40298840)
[»] chr3 (3 HSPs)
chr3 (110-175)||(215600-215665)
chr3 (11-49)||(49506348-49506386)
chr3 (11-51)||(12264392-12264432)
[»] chr7 (7 HSPs)
chr7 (110-184)||(42987724-42987797)
chr7 (152-202)||(17298587-17298637)
chr7 (153-201)||(6204050-6204098)
chr7 (136-191)||(19777820-19777875)
chr7 (11-48)||(21670173-21670210)
chr7 (11-48)||(27138528-27138565)
chr7 (9-49)||(27903416-27903456)
[»] chr1 (4 HSPs)
chr1 (110-188)||(47383627-47383705)
chr1 (111-213)||(19596510-19596612)
chr1 (1-49)||(45115427-45115475)
chr1 (11-44)||(36465887-36465920)
[»] scaffold0468 (1 HSPs)
scaffold0468 (391-423)||(10346-10378)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 110 - 398
Target Start/End: Complemental strand, 45164040 - 45163755
Alignment:
Q  110 cagtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatct 209  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45164040 cagtcacatcaattaatatcatttaattttattttcatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatctggggttgtgctcatct 45163941  T
Q  210 aagattatctctaagatgtaaaatgatgattgatatccttgattcaacgtcatccacctgttccactaagcatcgagaaaataaaagataagttattcaa 309  Q
    |||| | |||  |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45163940 aagactttctacaagatgtaaaatgat---tgatatccttgattcaacgtcatccacctgttccactaagcatcgagaaaataaaagacaagttattcaa 45163844  T
Q  310 tataaccaacacaatctctagccatgcataaattgcatacaatgaagataataagcccacaaagaacaaaacatgtgaagatttttggc 398  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45163843 tataaccaacacaatccctagccatgcataaattgcatacaatgaagataataagcccacaaagaacaaaacatgtgaagatttttggc 45163755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 110 - 211
Target Start/End: Original strand, 24948543 - 24948643
Alignment:
Q  110 cagtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatct 209  Q
    |||||||||||||||||||||||||||||||||  ||||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||| ||||||    
T  24948543 cagtcacatcaattaatatcatttaattttattctcatttaatttttt-tatgttttgtgagtgtgtccaaatcattttgatttggggttgtgttcatct 24948641  T
Q  210 aa 211  Q
    ||    
T  24948642 aa 24948643  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 30473921 - 30473881
Alignment:
Q  11 tatatgacctgtgcggcagtacgggtgaaaagtctagttgt 51  Q
    ||||||||| ||||||||| ||||||| |||||||||||||    
T  30473921 tatatgacccgtgcggcagcacgggtggaaagtctagttgt 30473881  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 40835481 - 40835590
Alignment:
Q  111 agtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatcta 210  Q
    ||||||||||| ||||||||||||||||||||  | ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  40835481 agtcacatcaactaatatcatttaattttattctcgtttaaatttttctatgttttgtgagtgtgtccaaatcattttgatttggggttgtgctcatcta 40835580  T
Q  211 agattatctc 220  Q
    ||||| ||||    
T  40835581 agattttctc 40835590  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 29888744 - 29888843
Alignment:
Q  113 tcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatctaag 212  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||||||||||| ||| ||||||||||||||||||  |||||||||| | ||||||    
T  29888744 tcacatcaattaatatcatttaattttattctcatttaaa-ttttctatgttttgttagtatgcccaaatcattttgattcggggttgtgcccgtctaag 29888842  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 40608233 - 40608313
Alignment:
Q  113 tcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatat 193  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||| ||||||||||||||||||    
T  40608233 tcacatcaattaatatcatttaattttatttttattcaaatttttcaatgttttgtgagtgtacccaaatcattttgatat 40608313  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 11669628 - 11669718
Alignment:
Q  110 cagtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgt 201  Q
    |||||| |||||||||||||||||||||| |||  ||||||||||||| ||| |||||||||| |||||||||||||||||| | |||||||    
T  11669628 cagtcaaatcaattaatatcatttaattt-attctcatttaaatttttttatattttgtgagtatgcccaaatcattttgatttagggttgt 11669718  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26724126 - 26724174
Alignment:
Q  1 ttttgcattatatatgacctgtgcggcagtacgggtgaaaagtctagtt 49  Q
    ||||||||| ||||| ||| ||||||||| |||||||||||||||||||    
T  26724126 ttttgcattgtatataacccgtgcggcagcacgggtgaaaagtctagtt 26724174  T

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Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 114 - 208
Target Start/End: Complemental strand, 38257012 - 38256918
Alignment:
Q  114 cacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatc 208  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| ||||    
T  38257012 cacatcaattaatatcatttaattttattctcatttaaatttttctatgttttgtgagtgtgcctaaatcattttgatttggggtcgtgcccatc 38256918  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 1054225 - 1054309
Alignment:
Q  125 atatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatct 209  Q
    |||||| ||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||    
T  1054225 atatcaattaattttatttttatttaaatttttctatgtcttgtgagtgtgcccaaatcattttgatttagggttgtgcccatct 1054309  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 14536232 - 14536129
Alignment:
Q  110 cagtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatct 209  Q
    ||||| |||||||| |||||| ||||||||| |   |||||| ||||| |||||||||||||||||| ||||||||||||||  |||||||||| |||||    
T  14536232 cagtcgcatcaattgatatcaattaattttactcttatttaattttttttatgttttgtgagtgtgctcaaatcattttgattcggggttgtgcccatct 14536133  T
Q  210 aaga 213  Q
    ||||    
T  14536132 aaga 14536129  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 29302513 - 29302481
Alignment:
Q  110 cagtcacatcaattaatatcatttaattttatt 142  Q
    |||| ||||||||||||||||||||||||||||    
T  29302513 cagtgacatcaattaatatcatttaattttatt 29302481  T

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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 241 - 349
Target Start/End: Original strand, 24124347 - 24124455
Alignment:
Q  241 gatatccttgattcaacgtcatccacctgttccactaagcatcgagaaaataaaagataagttattcaatataaccaacacaatctctagccatgcataa 340  Q
    ||||||||||||||||| ||||||||||||| || |||| || |||||||||||||| |  |||||||||||||||||||| |||  |||||||||||||    
T  24124347 gatatccttgattcaacatcatccacctgtttcaataagtattgagaaaataaaagaaagattattcaatataaccaacaccatccgtagccatgcataa 24124446  T
Q  341 attgcatac 349  Q
    |||||||||    
T  24124447 attgcatac 24124455  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 15044914 - 15044951
Alignment:
Q  11 tatatgacctgtgcggcagtacgggtgaaaagtctagt 48  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  15044914 tatatgacctgtgcggcagcacgggtggaaagtctagt 15044951  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 13567789 - 13567699
Alignment:
Q  113 tcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgc 203  Q
    ||||||| ||||||||||||| ||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| ||| |||||||    
T  13567789 tcacatcgattaatatcattttattttattttcatttaaatttttccatgttttgtgagtatgcccaaatcattttgatttggagttgtgc 13567699  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 14438990 - 14438927
Alignment:
Q  152 atttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatctaagatt 215  Q
    |||||| |||||||||| ||||||||||||||||||| || | ||||| |||||||| ||||||    
T  14438990 atttttttatgttttgtaagtgtgcccaaatcattttaatttagggttatgctcatcaaagatt 14438927  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 30856636 - 30856725
Alignment:
Q  111 agtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtg 202  Q
    ||||||||||||||||||||||||||||| ||  | ||||| |||||| |  | || | ||||||||||||| |||||||| || |||||||    
T  30856636 agtcacatcaattaatatcatttaatttttttctcttttaattttttcaa--tattataagtgtgcccaaataattttgatttgaggttgtg 30856725  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2988903 - 2988950
Alignment:
Q  1 ttttgcattatatatgacctgtgcggcagtacgggtgaaaagtctagt 48  Q
    ||||||||| |||||||||  |||||||| ||||||||||||||||||    
T  2988903 ttttgcattgtatatgacccatgcggcagcacgggtgaaaagtctagt 2988950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 40298840 - 40298793
Alignment:
Q  110 cagtcacatcaattaatatcatttaattttatttccatttaaattttt 157  Q
    ||||||||||||||| |||||||||||||||||   ||||||||||||    
T  40298840 cagtcacatcaattattatcatttaattttattcttatttaaattttt 40298793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 215665 - 215600
Alignment:
Q  110 cagtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtg 175  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  215665 cagtcacatcaattaatatcatttaattttattctcatttaaatttttctatgttttgtgagtgtg 215600  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 49506386 - 49506348
Alignment:
Q  11 tatatgacctgtgcggcagtacgggtgaaaagtctagtt 49  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  49506386 tatatgacccgtgcggcagtacgggtggaaagtctagtt 49506348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 12264392 - 12264432
Alignment:
Q  11 tatatgacctgtgcggcagtacgggtgaaaagtctagttgt 51  Q
    ||||||||| ||||||||| ||||||| |||||||||||||    
T  12264392 tatatgacccgtgcggcagcacgggtggaaagtctagttgt 12264432  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 42987797 - 42987724
Alignment:
Q  110 cagtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatca 184  Q
    |||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||    
T  42987797 cagtcacatcaattaagatcatttaattt-attttcatttaaatttttctatgttttgtgagtgtgctcaaatca 42987724  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 17298637 - 17298587
Alignment:
Q  152 atttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtg 202  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||||||||    
T  17298637 atttttttatgttttgtgagtgtgcccaaattattttgatttggggttgtg 17298587  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 6204098 - 6204050
Alignment:
Q  153 tttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgt 201  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||||||    
T  6204098 tttttctatgttttgtgagtgtgtctaaatcattttgatttggggttgt 6204050  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 19777820 - 19777875
Alignment:
Q  136 ttttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgat 191  Q
    |||||||  |||||||||||||||||||||| |||||| ||| |||||||||||||    
T  19777820 ttttattctcatttaaatttttctatgttttttgagtgagcctaaatcattttgat 19777875  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 21670173 - 21670210
Alignment:
Q  11 tatatgacctgtgcggcagtacgggtgaaaagtctagt 48  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  21670173 tatatgacctgtgcggcagcacgggtggaaagtctagt 21670210  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 27138565 - 27138528
Alignment:
Q  11 tatatgacctgtgcggcagtacgggtgaaaagtctagt 48  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  27138565 tatatgacctgtgcggcagcacgggtggaaagtctagt 27138528  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 27903456 - 27903416
Alignment:
Q  9 tatatatgacctgtgcggcagtacgggtgaaaagtctagtt 49  Q
    ||||||||||| ||||||||| ||||||| |||||||||||    
T  27903456 tatatatgacccgtgcggcagcacgggtggaaagtctagtt 27903416  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 47383705 - 47383627
Alignment:
Q  110 cagtcacatcaattaatatcatttaattttatttccatttaaatttttctatgttttgtgagtgtgcccaaatcatttt 188  Q
    ||||||||||||||||||| |||||||||||||  |||||||| ||||||||||||| |||||||| ||||| ||||||    
T  47383705 cagtcacatcaattaatattatttaattttattctcatttaaagttttctatgttttatgagtgtgtccaaaccatttt 47383627  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 19596510 - 19596612
Alignment:
Q  111 agtcacatcaattaatatcatttaattttatt-tccatttaaatttttctatgttttgtgagtgtgcccaaatcattttgatatggggttgtgctcatct 209  Q
    |||||| | |||||||||||||||||||| || ||  ||| | ||||||||||||| ||||||||| |||  |||||||||| || ||||||||||||||    
T  19596510 agtcactttaattaatatcatttaattttgttgtcgttttgagtttttctatgttt-gtgagtgtgtccatgtcattttgatttgcggttgtgctcatct 19596608  T
Q  210 aaga 213  Q
    ||||    
T  19596609 aaga 19596612  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45115475 - 45115427
Alignment:
Q  1 ttttgcattatatatgacctgtgcggcagtacgggtgaaaagtctagtt 49  Q
    ||||||||| ||||||||||||||| ||  |||||||||||||||||||    
T  45115475 ttttgcattgtatatgacctgtgcgacatcacgggtgaaaagtctagtt 45115427  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 36465887 - 36465920
Alignment:
Q  11 tatatgacctgtgcggcagtacgggtgaaaagtc 44  Q
    ||||||||||||||||||| ||||||||||||||    
T  36465887 tatatgacctgtgcggcagcacgggtgaaaagtc 36465920  T

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Target: scaffold0468 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 10346 - 10378
Alignment:
Q  391 tttttggcttaattgcagttttggcctcctatg 423  Q
    ||||||||||||| |||||||||||||||||||    
T  10346 tttttggcttaatagcagttttggcctcctatg 10378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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