View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3597_low_10 (Length: 361)
Name: NF3597_low_10
Description: NF3597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3597_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 21643694 - 21644027
Alignment:
| Q |
18 |
attgtttgcagctatcagcttcaaaagtatagaaatgcaggttcatttgttctaccagtagatccaaaagacaaagaaacatggggtgatagtgaacaca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21643694 |
attgtttgcagctatcagcttcaaaagtatagaaatgcaggctcatttgttctaccagtagatccaaaagacaaagaaacatggggtgatagtgaacaca |
21643793 |
T |
|
| Q |
118 |
gactagcctacgtatccgaaacaacagtaattttcaaagacatagttcaagtacgcgatgatcaatggtggaaagcactttcatctggctacataacaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21643794 |
gactagcctacgtatccgaaacaacagtaattttcaaagacatagttcaagtacgcgatgatcaatggtggaaagcactttcatctggctacataacaca |
21643893 |
T |
|
| Q |
218 |
atgggcagcaatgtaccctcaaaaagttgatgcactcttttatgcacattcagttgatgaagtaaaagcactttcaccacttcttgaaaaattcagatca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21643894 |
atgggcagcaatgtaccctcaaaaagttgatgcactcttttatgcacattcagttgatgaagtaaaagcactttcaccacttcttgaaaaattcagatca |
21643993 |
T |
|
| Q |
318 |
acagttggcaaaaaagcatacattgttgtctctg |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
21643994 |
acagttggcaaaaaagcatacattgttgtctctg |
21644027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University