View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3597_low_15 (Length: 249)

Name: NF3597_low_15
Description: NF3597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3597_low_15
NF3597_low_15
[»] chr5 (20 HSPs)
chr5 (1-235)||(36769083-36769311)
chr5 (1-131)||(39862496-39862619)
chr5 (1-127)||(614401-614522)
chr5 (1-131)||(23218481-23218604)
chr5 (5-130)||(42119617-42119737)
chr5 (4-130)||(8456975-8457096)
chr5 (4-130)||(10081140-10081261)
chr5 (5-130)||(11856290-11856410)
chr5 (4-130)||(16618582-16618701)
chr5 (1-42)||(27916218-27916259)
chr5 (1-130)||(38397595-38397717)
chr5 (1-132)||(6257419-6257543)
chr5 (4-130)||(25560339-25560460)
chr5 (1-131)||(37169042-37169165)
chr5 (1-41)||(29491423-29491463)
chr5 (4-127)||(29790231-29790347)
chr5 (4-131)||(33271282-33271403)
chr5 (1-42)||(10115238-10115279)
chr5 (1-42)||(33188332-33188373)
chr5 (86-130)||(22903252-22903296)
[»] chr3 (19 HSPs)
chr3 (1-131)||(10839389-10839514)
chr3 (1-130)||(1781757-1781881)
chr3 (1-126)||(54546904-54547023)
chr3 (2-131)||(6280369-6280492)
chr3 (1-109)||(43347345-43347448)
chr3 (1-130)||(21853194-21853316)
chr3 (1-131)||(8950513-8950636)
chr3 (1-131)||(32352843-32352966)
chr3 (1-131)||(40845926-40846049)
chr3 (1-129)||(8926762-8926885)
chr3 (1-131)||(44994977-44995101)
chr3 (4-131)||(5391453-5391573)
chr3 (5-132)||(23467507-23467627)
chr3 (5-130)||(20382514-20382634)
chr3 (2-130)||(36539627-36539750)
chr3 (5-130)||(19649385-19649506)
chr3 (1-43)||(27642737-27642779)
chr3 (1-131)||(33103738-33103862)
chr3 (1-42)||(50663212-50663253)
[»] chr2 (12 HSPs)
chr2 (1-131)||(14539713-14539838)
chr2 (4-130)||(6318470-6318592)
chr2 (1-131)||(19181544-19181667)
chr2 (1-131)||(14942053-14942176)
chr2 (1-131)||(40277297-40277420)
chr2 (1-131)||(42769767-42769890)
chr2 (1-130)||(29846439-29846561)
chr2 (51-131)||(1387342-1387421)
chr2 (5-130)||(40780050-40780171)
chr2 (5-131)||(14186451-14186570)
chr2 (1-42)||(43139825-43139866)
chr2 (63-130)||(23685436-23685503)
[»] chr7 (15 HSPs)
chr7 (1-130)||(10334173-10334297)
chr7 (1-130)||(17303123-17303248)
chr7 (1-132)||(24320448-24320572)
chr7 (1-131)||(44164752-44164875)
chr7 (1-130)||(34707113-34707235)
chr7 (1-130)||(26284387-26284510)
chr7 (4-131)||(29555951-29556071)
chr7 (1-108)||(29981122-29981223)
chr7 (1-131)||(10576669-10576792)
chr7 (1-42)||(15017851-15017892)
chr7 (1-42)||(43342488-43342529)
chr7 (1-108)||(34259536-34259637)
chr7 (1-42)||(19334569-19334610)
chr7 (1-42)||(29238152-29238193)
chr7 (4-41)||(33057669-33057706)
[»] chr4 (20 HSPs)
chr4 (1-131)||(25954746-25954869)
chr4 (4-130)||(17888562-17888683)
chr4 (4-130)||(31377385-31377506)
chr4 (1-131)||(1535767-1535890)
chr4 (4-125)||(9742545-9742661)
chr4 (1-131)||(49284353-49284476)
chr4 (1-42)||(19124747-19124788)
chr4 (1-42)||(46474072-46474113)
chr4 (1-132)||(34240988-34241112)
chr4 (1-130)||(11054448-11054575)
chr4 (1-122)||(20818570-20818686)
chr4 (1-131)||(37801273-37801396)
chr4 (5-131)||(52632514-52632633)
chr4 (1-42)||(47084090-47084131)
chr4 (5-99)||(10094406-10094495)
chr4 (5-131)||(12792244-12792365)
chr4 (5-108)||(46583554-46583651)
chr4 (1-42)||(50328874-50328915)
chr4 (62-130)||(16338309-16338375)
chr4 (63-130)||(35322770-35322837)
[»] chr1 (16 HSPs)
chr1 (1-131)||(10156025-10156148)
chr1 (1-131)||(42517303-42517430)
chr1 (4-127)||(38859849-38859967)
chr1 (1-130)||(10907657-10907781)
chr1 (1-131)||(26835332-26835457)
chr1 (1-131)||(7742788-7742911)
chr1 (1-131)||(48392415-48392538)
chr1 (1-131)||(49902464-49902587)
chr1 (4-127)||(5974988-5975104)
chr1 (1-131)||(3346782-3346905)
chr1 (1-131)||(47022698-47022821)
chr1 (1-130)||(14796871-14796995)
chr1 (1-130)||(14805745-14805869)
chr1 (1-42)||(42456650-42456691)
chr1 (1-43)||(37189717-37189759)
chr1 (51-127)||(30252799-30252875)
[»] chr6 (12 HSPs)
chr6 (1-125)||(13103127-13103246)
chr6 (1-131)||(24694660-24694783)
chr6 (1-131)||(14309807-14309930)
chr6 (1-130)||(28750659-28750783)
chr6 (1-42)||(11084668-11084709)
chr6 (7-131)||(27863694-27863812)
chr6 (64-130)||(11279536-11279601)
chr6 (1-42)||(1727942-1727983)
chr6 (51-128)||(11212669-11212745)
chr6 (1-42)||(13627618-13627659)
chr6 (1-42)||(24497583-24497624)
chr6 (5-42)||(34103763-34103800)
[»] chr8 (11 HSPs)
chr8 (1-132)||(33934378-33934502)
chr8 (1-127)||(42013872-42013991)
chr8 (1-131)||(21525354-21525477)
chr8 (1-131)||(35806790-35806913)
chr8 (5-130)||(22324593-22324711)
chr8 (1-109)||(24065290-24065392)
chr8 (1-109)||(42072445-42072547)
chr8 (1-131)||(26021391-26021515)
chr8 (1-43)||(16591384-16591426)
chr8 (1-42)||(10112125-10112166)
chr8 (1-41)||(2824191-2824231)
[»] scaffold0086 (1 HSPs)
scaffold0086 (1-42)||(20840-20881)
[»] scaffold0079 (1 HSPs)
scaffold0079 (62-130)||(54485-54551)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 36769083 - 36769311
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||     | ||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  36769083 ttgcaatttcttatgtaaattcctctgaatttcttatataaa-----cctctatgaattaggcaatttctttagatttttgattattt-gcttgcaattt 36769176  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaaannnnnnnnccttataataatcctggctccgccacaatacaaggtgggaattatcctatgacgtaattt 200  Q
    |  |||||| |||||| ||||||||||||||         ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  36769177 catatgtaaacccctataaatgtgttgcaaattttttttgccttataataatcctagctccgccacagtacaaggtgggaattatcctatgacgtaattt 36769276  T
Q  201 gttaattagtacaattttaaatgtatgtttggtat 235  Q
    |||||||||||||||||||||||||||||||||||    
T  36769277 gttaattagtacaattttaaatgtatgtttggtat 36769311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 39862496 - 39862619
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||||||| |||||||||||||||||     |  |||| |||| |||||||| ||||||||||| |||| ||||||||||||||    
T  39862496 ttgcaatttcttgtgtaaattcctatgaatttcttatataaa-----cccctataaattgggcaatttctttagattttttatta-tttgcttgcaattt 39862589  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || || | || ||||||||||||||||||||    
T  39862590 cttatat-acgccctaaaaatgtgttgcaaa 39862619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 614401 - 614522
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttaga-tttttgattattttgcttgcaatt 99  Q
    |||||||||||||||||||||||| ||||||| ||||||||||       |||| |||| |||||||| |||||| ||||| |||| |||||||||||||    
T  614401 ttgcaatttcttatgtaaattcctctgaattttttatataaat-----ccctataaatttggcaatttctttagatttttttatta-tttgcttgcaatt 614494  T
Q  100 tctaatgtaaccccctaaaaatgtgttg 127  Q
    ||| |||||| | |||| ||||||||||    
T  614495 tcttatgtaaacacctataaatgtgttg 614522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 23218604 - 23218481
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||||||     |  |||| |||| |||||||| |||| |||||| ||||||| |||||||||||    
T  23218604 ttgcaatttcttgtgtaaatccctatgaatttcttatataaa-----cccctataaattgggcaatttctttacattttttattattt-gcttgcaattt 23218511  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  23218510 cttatgt-actccctataaatgtgttgcaaa 23218481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 42119737 - 42119617
Alignment:
Q  5 aatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttg-attattttgcttgcaatttcta 103  Q
    |||||||||||||||||||| |||||||||||||||||     | ||||| |||| | |||||| |||||||||||  ||||||| | ||| |||||||     
T  42119737 aatttcttatgtaaattcctctgaatttcttatataaa-----cctctataaattggacaatttctttagatttttttattattt-gtttgtaatttctt 42119644  T
Q  104 atgtaaccccctaaaaatgtgttgcaa 130  Q
    |||||| |||||| |||||||||||||    
T  42119643 atgtaaacccctataaatgtgttgcaa 42119617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 8456975 - 8457096
Alignment:
Q  4 caatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttg-attattttgcttgcaatttct 102  Q
    ||||||||||||||||| ||| ||||||||||||||||      |  |||| |||| |||||||| |||||||||||  ||||||| |||||||||||||    
T  8456975 caatttcttatgtaaatccctatgaatttcttatataac-----cccctataaattgggcaatttctttagatttttttattattt-gcttgcaatttct 8457068  T
Q  103 aatgtaaccccctaaaaatgtgttgcaa 130  Q
     |||||| |||||| |||| ||||||||    
T  8457069 tatgtaaacccctataaatatgttgcaa 8457096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 10081261 - 10081140
Alignment:
Q  4 caatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttaga-tttttgattattttgcttgcaatttct 102  Q
    ||||||||||||||||| ||| |||||||||||||     |||||  |||| |||| |||||||| |||||| ||||| |||| ||||||| ||||||||    
T  10081261 caatttcttatgtaaatccctatgaatttcttata-----taaacccctataaattgggcaatttctttagatttttttatta-tttgcttacaatttct 10081168  T
Q  103 aatgtaaccccctaaaaatgtgttgcaa 130  Q
     |||||| | |||| |||||||||||||    
T  10081167 tatgtaaactcctataaatgtgttgcaa 10081140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 11856410 - 11856290
Alignment:
Q  5 aatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagattttt-gattattttgcttgcaatttcta 103  Q
    ||||||||||||||||  || |||||||||||||||||| |     |||| |||| |||||||| ||||||||||| ||||||||  ||||||||||||     
T  11856410 aatttcttatgtaaatcgctctgaatttcttatataaatca-----ctataaattgggcaatttctttagattttttgattattta-cttgcaatttctt 11856317  T
Q  104 atgtaaccccctaaaaatgtgttgcaa 130  Q
    |||||| | |||| |||| ||||||||    
T  11856316 atgtaaactcctataaatatgttgcaa 11856290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 16618582 - 16618701
Alignment:
Q  4 caatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaatttcta 103  Q
    ||||||||| ||||||| ||| |||||||||||||||||     || |||| |||| | |||||| |||| |||||| ||||||| |||||||||||||     
T  16618582 caatttcttgtgtaaatccctatgaatttcttatataaa-----ctcctataaattggacaatttttttatattttttattattt-gcttgcaatttctt 16618675  T
Q  104 atgtaaccccctaaaaatgtgttgcaa 130  Q
    |||| || ||||| |||||||||||||    
T  16618676 atgt-acgccctataaatgtgttgcaa 16618701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27916259 - 27916218
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  27916259 ttgcaatttcttatgtaaattcctctgaatttcttatataaa 27916218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 38397717 - 38397595
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||     |||||  |||| |||| |||||||| |||| |||||| |||| ||||||||||||||    
T  38397717 ttgcaatttcttgtgtaaatccctatgaatttcttata-----taaacccctataaattgggcaatttctttacattttttatta-tttgcttgcaattt 38397624  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    || |||| ||  |||| |||||||||||||    
T  38397623 cttatgt-acgtcctataaatgtgttgcaa 38397595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 6257419 - 6257543
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| ||||||||||||| |||     |  |||| |||| |||||||| |||| |||||| ||||||| |||||||||||    
T  6257419 ttgcaatttcttgtgtaaatccctatgaatttcttatacaaa-----cccctataaattgggcaatttctttacattttttattattt-gcttgcaattt 6257512  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaaa 132  Q
    || || || | ||||| |||||||||||||||    
T  6257513 cttatata-cgccctataaatgtgttgcaaaa 6257543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 25560339 - 25560460
Alignment:
Q  4 caatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatt-tttgattattttgcttgcaatttct 102  Q
    ||||||||||||||||| | | | |||||||||||||||     | ||||| |||| | |||||| |||||||| ||| ||||||| |||||||||||||    
T  25560339 caatttcttatgtaaatccttataaatttcttatataaa-----catctataaattggacaatttctttagattattttattattt-gcttgcaatttct 25560432  T
Q  103 aatgtaaccccctaaaaatgtgttgcaa 130  Q
     |||||| ||| || |||||||||||||    
T  25560433 tatgtaaacccatataaatgtgttgcaa 25560460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 37169042 - 37169165
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    ||||||||| || ||||||| ||| |||||||||||||||||     |  |||| |||| |||||||| |||| |||||| ||||||| |||||||||||    
T  37169042 ttgcaattttttgtgtaaatccctatgaatttcttatataaa-----cccctataaattgggcaatttctttacattttttattattt-gcttgcaattt 37169135  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| |||||||| |||||    
T  37169136 cttatgt-acgccctataaatgtgtggcaaa 37169165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29491423 - 29491463
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataa 41  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  29491423 ttgcaatttcttatgtaaatttctatgaatttcttatataa 29491463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 29790231 - 29790347
Alignment:
Q  4 caatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaatttcta 103  Q
    ||||||||||||||||||| | |||||||||||||     ||||| | ||| |||| |||||||| ||||| |||||||||| |||||||  |||||||     
T  29790231 caatttcttatgtaaattcttatgaatttcttata-----taaacctttataaattgggcaatttctttag-tttttgatta-tttgcttttaatttctt 29790323  T
Q  104 atgtaaccccctaaaaatgtgttg 127  Q
    ||||||  ||||| ||| ||||||    
T  29790324 atgtaattccctataaacgtgttg 29790347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 33271282 - 33271403
Alignment:
Q  4 caatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaatttcta 103  Q
    ||||||||||||||||||||  |||||||||||||     ||||| ||||| |||| | |||||| |||| |||||| |||| |||| ||| |||||||     
T  33271282 caatttcttatgtaaattccgttgaatttcttata-----taaacctctataaattggacaatttctttatattttttatta-tttgtttgtaatttctt 33271375  T
Q  104 atgtaaccccctaaaaatgtgttgcaaa 131  Q
    || ||| |||||| |||| | |||||||    
T  33271376 atataaacccctataaatatattgcaaa 33271403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10115279 - 10115238
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    ||||||||| |||||||||||||| || ||||||||||||||    
T  10115279 ttgcaattttttatgtaaattcctctggatttcttatataaa 10115238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33188332 - 33188373
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  33188332 ttgcaatttcttatgtaaattcatctaaatttcttatataaa 33188373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 22903296 - 22903252
Alignment:
Q  86 ttttgcttgcaatttctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    ||||||||||||||||| |||||| || ||| |||||||||||||    
T  22903296 ttttgcttgcaatttcttatgtaaacctctataaatgtgttgcaa 22903252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 10839389 - 10839514
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagattttt-gattattttgcttgcaatt 99  Q
    ||||||||||||||||||||| || |||||||||||||||||     | ||||| |||| |||||||| ||||||||||| |||||||| ||||||||||    
T  10839389 ttgcaatttcttatgtaaatttctctgaatttcttatataaa-----cctctataaattgggcaatttctttagattttttgattattt-gcttgcaatt 10839482  T
Q  100 tctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    ||| |||||| | |||| | ||||||||||||    
T  10839483 tcttatgtaaacacctatacatgtgttgcaaa 10839514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 1781881 - 1781757
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagattttt-gattattttgcttgcaatt 99  Q
    |||||||||||||||||||| ||| |||||||||||||||||     |  | || |||| |||||||| ||||||||||| |||||||| ||||||||||    
T  1781881 ttgcaatttcttatgtaaatccctctgaatttcttatataaa-----ccccaataaattgggcaatttctttagattttttgattattt-gcttgcaatt 1781788  T
Q  100 tctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    ||  |||||| |||||| |||||||||||||    
T  1781787 tcgtatgtaaacccctataaatgtgttgcaa 1781757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 54547023 - 54546904
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    ||||||||||||| |||||||||| |||||||||||||     |||||  |||| |||| | |||||| |||||||||||||||| ||||||| ||||||    
T  54547023 ttgcaatttcttacgtaaattcctttgaatttcttata-----taaacccctataaattggacaatttctttagatttttgatta-tttgcttacaattt 54546930  T
Q  101 ctaatgtaaccccctaaaaatgtgtt 126  Q
    || ||||||  ||||| |||||||||    
T  54546929 cttatgtaaatccctataaatgtgtt 54546904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 131
Target Start/End: Original strand, 6280369 - 6280492
Alignment:
Q  2 tgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaatttc 101  Q
    |||||||||||||||||||| |  |||||||||||||||||     | ||||| |||| | |||||||||||||||||||| || ||||||||| ||||     
T  6280369 tgcaatttcttatgtaaatttccctgaatttcttatataaa-----cctctataaatttgacaatttatttagatttttga-taatttgcttgccatttt 6280462  T
Q  102 taatgtaaccccctaaaaatgtgttgcaaa 131  Q
    | |||||| ||  || ||||||||||||||    
T  6280463 ttatgtaaacctttataaatgtgttgcaaa 6280492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 43347345 - 43347448
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttaga-tttttgattattttgcttgcaatt 99  Q
    |||||||||||||||||||||||| |||||||||||||     |||||  |||  |||| |||||||| |||||| |||||||||| |||||||||||||    
T  43347345 ttgcaatttcttatgtaaattcctctgaatttcttata-----taaacccctacaaattgggcaatttctttagattttttgatta-tttgcttgcaatt 43347438  T
Q  100 tctaatgtaa 109  Q
    ||| ||||||    
T  43347439 tcttatgtaa 43347448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 21853316 - 21853194
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||||||    ||  |||| |||| |||||||| |||| |||||| ||||||| |||||||||||    
T  21853316 ttgcaatttcttgtgtaaatccctatgaatttcttatataaa----acc-ctataaattgggcaatttctttacattttttattattt-gcttgcaattt 21853223  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    || |||| || ||||| |||||||||||||    
T  21853222 cttatgt-acgccctataaatgtgttgcaa 21853194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 8950513 - 8950636
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||||||| ||||||||||||||||||       |||| |||| |||||||| |||| |||||| |||| |||||||| |||||    
T  8950513 ttgcaatttcttgtgtaaattcctatgaatttcttatataaat-----ccctataaattgggcaatttctttacattttttatta-tttgcttgaaattt 8950606  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| |||| |||||||||    
T  8950607 cttatgt-acgccctataaatatgttgcaaa 8950636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 32352966 - 32352843
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| | ||||| ||| |||||||||||||||||     |  |||| ||||||||||||| |||| |||||| |||| ||||||| ||||||    
T  32352966 ttgcaatttcttgtataaatccctatgaatttcttatataaa-----cccctataaattaggcaatttctttacattttttatta-tttgcttacaattt 32352873  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  32352872 cttatgt-acgccctataaatgtgttgcaaa 32352843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 40845926 - 40846049
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    ||||||||| || ||||||| ||| |||||||||||||||||     |  |||| |||| |||||||| |||| |||||| ||||||| |||||||||||    
T  40845926 ttgcaattttttgtgtaaatccctatgaatttcttatataaa-----cccctataaattgggcaatttctttacattttttattattt-gcttgcaattt 40846019  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  40846020 cttatgt-acgccctataaatgtgttgcaaa 40846049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 8926885 - 8926762
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttaga-tttttgattattttgcttgcaatt 99  Q
    |||||||||| ||||||||||||| ||||||||| |||     |||||  |||| |||| |||||||| | |||| |||||||||| |||||||||||||    
T  8926885 ttgcaatttcatatgtaaattcctctgaatttctgata-----taaacccctataaatttggcaatttctgtagattttttgatta-tttgcttgcaatt 8926792  T
Q  100 tctaatgtaaccccctaaaaatgtgttgca 129  Q
    ||| |||| | ||| || ||||||||||||    
T  8926791 tcttatgttaacccttataaatgtgttgca 8926762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 44994977 - 44995101
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||||||     |   ||| |||| |||||||| |||| |||||| ||||||| |||||||||||    
T  44994977 ttgcaatttcttgtgtaaatccctatgaatttcttatataaac----cccttataaattgggcaatttctttacattttttattattt-gcttgcaattt 44995071  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  44995072 cttatgt-acgccctataaatgtgttgcaaa 44995101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 5391573 - 5391453
Alignment:
Q  4 caatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaatttcta 103  Q
    ||||||||| ||||||| ||| |||||||||||||||||     |  |||| |||| | |||||| |||| |||||| ||||||| |||||||||||||     
T  5391573 caatttcttgtgtaaatccctatgaatttcttatataaa-----cccctataaattggacaatttctttacattttttattattt-gcttgcaatttctt 5391480  T
Q  104 atgtaaccccctaaaaatgtgttgcaaa 131  Q
    |||| || ||||| ||||||||||||||    
T  5391479 atgt-acgccctataaatgtgttgcaaa 5391453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 23467507 - 23467627
Alignment:
Q  5 aatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaatttctaa 104  Q
    ||||| || ||||||| ||| |||||||||||||||||     |  |||| |||| |||||||| |||| |||||| ||||||| ||||||||||||| |    
T  23467507 aattttttgtgtaaatccctatgaatttcttatataaa-----cccctataaattgggcaatttctttacattttttattattt-gcttgcaatttctta 23467600  T
Q  105 tgtaaccccctaaaaatgtgttgcaaaa 132  Q
    ||| || ||||| |||||||||||||||    
T  23467601 tgt-acgccctataaatgtgttgcaaaa 23467627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 20382634 - 20382514
Alignment:
Q  5 aatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttaga-tttttgattattttgcttgcaatttcta 103  Q
    |||||||||||||||| ||| |||||||||||||     |||||  |||| |||| || ||||| |||||| ||||| |||| ||||||||||||||||     
T  20382634 aatttcttatgtaaatccctatgaatttcttata-----taaacccctataaattgggaaatttctttagatttttttatta-tttgcttgcaatttctt 20382541  T
Q  104 atgtaaccccctaaaaatgtgttgcaa 130  Q
    |||||| | |||| ||||| |||||||    
T  20382540 atgtaaactcctataaatgcgttgcaa 20382514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 36539750 - 36539627
Alignment:
Q  2 tgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagattttt-gattattttgcttgcaattt 100  Q
    ||||||||||||||||||| ||| | ||||||||||||||      |  |||| |||| |||||||| |||| |||||| |||||||| | |||||||||    
T  36539750 tgcaatttcttatgtaaatccctataaatttcttatataat-----cccctataaattgggcaatttctttaaattttttgattattt-gtttgcaattt 36539657  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    |  |||||| |||||| |||||||||||||    
T  36539656 cctatgtaaacccctataaatgtgttgcaa 36539627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 19649385 - 19649506
Alignment:
Q  5 aatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagattttt--gattattttgcttgcaatttct 102  Q
    ||||||||||||||||  || |||||||||||||||||     |   ||| |||| | |||||| |||||||||||  |||||||| |||||||||||||    
T  19649385 aatttcttatgtaaatcgctatgaatttcttatataaa-----cccttataaattggacaatttctttagattttttggattattt-gcttgcaatttct 19649478  T
Q  103 aatgtaaccccctaaaaatgtgttgcaa 130  Q
     ||||||  ||||| |||||||||||||    
T  19649479 tatgtaattccctataaatgtgttgcaa 19649506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27642779 - 27642737
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaat 43  Q
    |||||||||||||||||||| | | ||||||||||||||||||    
T  27642779 ttgcaatttcttatgtaaatccttttgaatttcttatataaat 27642737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 33103862 - 33103738
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||||||||||||||  | |||||||||||||| |       |||| |||| |  |||||||||| |||||| |||| |||||||| |||||    
T  33103862 ttgcaatttcttatgtaaattcccttaaatttcttatataagt-----ccctataaattggataatttatttaaattttttatta-tttgcttgtaattt 33103769  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || ||||||  || || ||||||||||||||    
T  33103768 cttatgtaaatccttataaatgtgttgcaaa 33103738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50663253 - 50663212
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    ||||||||||||||||| |||||| | |||||||||||||||    
T  50663253 ttgcaatttcttatgtagattcctctaaatttcttatataaa 50663212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 14539713 - 14539838
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttaga-tttttgattattttgcttgcaatt 99  Q
    |||||||||||||||||| ||||| ||||||||||||||||||     | |||| ||||||||||||| |||||| ||||| |||||||| |||||||||    
T  14539713 ttgcaatttcttatgtaatttcctctgaatttcttatataaat-----tcctataaattaggcaatttctttagatttttttattatttt-cttgcaatt 14539806  T
Q  100 tctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    ||| || ||| | |||| ||||||||||||||    
T  14539807 tcttatataaacacctataaatgtgttgcaaa 14539838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 6318470 - 6318592
Alignment:
Q  4 caatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattatt--ttgcttgcaatttc 101  Q
    ||||||||||||||||| ||| ||||||||||||||||||       |||| |||| |||||||| |||||||||||  |||||  ||||||||||||||    
T  6318470 caatttcttatgtaaatccctatgaatttcttatataaatcc-----ctataaattgggcaatttctttagatttttt-ttattatttgcttgcaatttc 6318563  T
Q  102 taatgtaaccccctaaaaatgtgttgcaa 130  Q
     ||||||| |||||| |||||||||||||    
T  6318564 aaatgtaagcccctataaatgtgttgcaa 6318592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 19181667 - 19181544
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||||||| |||||||||||||     |||||  |||| |||| |||||||| |||| |||||| |||| ||||||||||||||    
T  19181667 ttgcaatttcttgtgtaaattcctatgaatttcttata-----taaacccctataaattgggcaatttctttacattttttatta-tttgcttgcaattt 19181574  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| |  ||||| ||||||||||||||    
T  19181573 cttatgt-atgccctataaatgtgttgcaaa 19181544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 14942053 - 14942176
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||     |||||  |||| |||| |||||||| |||| |||||| |||| ||||||||||||||    
T  14942053 ttgcaatttcttgtgtaaatccctatgaatttcttata-----taaacccctataaattgggcaatttctttacattttttatta-tttgcttgcaattt 14942146  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || || || ||||||||||||||    
T  14942147 cttatgt-acgccttataaatgtgttgcaaa 14942176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 40277297 - 40277420
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    ||||||||| |||||||||| ||| | ||||||||||||||||       |||| |||| |||||||| |||| |||||| ||||||| |||||||||||    
T  40277297 ttgcaattttttatgtaaatccctataaatttcttatataaatcc-----ctataaattgggcaatttctttacattttttattattt-gcttgcaattt 40277390  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  40277391 cttatgt-acgccctataaatgtgttgcaaa 40277420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 42769767 - 42769890
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||     |||||  |||| |||| |||||||| |||| |||||| |||| ||||||||||||||    
T  42769767 ttgcaatttcttgtgtaaatccctatgaatttcttata-----taaacccctataaattgggcaatttctttacattttttatta-tttgcttgcaattt 42769860  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| |  ||||| ||||||||||||||    
T  42769861 cttatgt-atgccctataaatgtgttgcaaa 42769890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 29846561 - 29846439
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||     |||||  |||| |||| | |||||| |||| |||||| |||| ||||||||||||||    
T  29846561 ttgcaatttcttgtgtaaatccctatgaatttcttata-----taaacccctataaattggacaatttctttacattttttatta-tttgcttgcaattt 29846468  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    || |||| || ||||| |||||||||||||    
T  29846467 cttatgt-acgccctataaatgtgttgcaa 29846439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 1387342 - 1387421
Alignment:
Q  51 ctatgaattaggcaatttatttagatttttgattattttgcttgcaatttctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    |||| |||| || ||||| ||||||||||| ||||||| ||||||||||||| |||||| ||| || ||||||||||||||    
T  1387342 ctataaattgggtaatttctttagattttttattattt-gcttgcaatttcttatgtaaacccttacaaatgtgttgcaaa 1387421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 40780171 - 40780050
Alignment:
Q  5 aatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaatttctaa 104  Q
    |||||||||||||||||||| ||||||||||||||||   | ||  |||| |||| | |||||| |||| |||||| | |  |||||||||||||||| |    
T  40780171 aatttcttatgtaaattcctctgaatttcttatataa---acac-cctataaatttgacaatttttttaaattttttaattatttgcttgcaatttctta 40780076  T
Q  105 tgtaaccccctaaaaatgtgttgcaa 130  Q
    ||||| || ||| |||| ||||||||    
T  40780075 tgtaaaccgctataaatatgttgcaa 40780050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 14186451 - 14186570
Alignment:
Q  5 aatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaatttctaa 104  Q
    |||||||| ||||||| ||| |||||||||||||||||     |  |||| |||| |||||||| |||| | |||| ||||||| ||||||||||||| |    
T  14186451 aatttcttgtgtaaatccctatgaatttcttatataaa-----cccctataaattgggcaatttctttacactttttattattt-gcttgcaatttctta 14186544  T
Q  105 tgtaaccccctaaaaatgtgttgcaaa 131  Q
    ||| || ||||| ||||||||||||||    
T  14186545 tgt-acgccctataaatgtgttgcaaa 14186570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43139866 - 43139825
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    |||||||||||||||||| ||||| | |||||||||||||||    
T  43139866 ttgcaatttcttatgtaagttcctcttaatttcttatataaa 43139825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 23685436 - 23685503
Alignment:
Q  63 caatttatttagat-ttttgattattttgcttgcaatttctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    ||||||||||| || |||||||||||| ||||||||||||| |||||| ||| || |||| ||||||||    
T  23685436 caatttatttatatattttgattattt-gcttgcaatttcttatgtaaacccttataaatatgttgcaa 23685503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 10334297 - 10334173
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagat-ttttgattattttgcttgcaatt 99  Q
    |||||||||||||||||||||||| |||||||||||||||||     ||  ||| |||| |||||||| ||||||| |||| | ||||| ||||||||||    
T  10334297 ttgcaatttcttatgtaaattcctctgaatttcttatataaa-----ctcttataaattgggcaatttctttagatatttttaatattt-gcttgcaatt 10334204  T
Q  100 tctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    ||| |||||| |||||| |||||||||||||    
T  10334203 tcttatgtaaacccctataaatgtgttgcaa 10334173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 17303123 - 17303248
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttaga--tttttgattattttgcttgcaat 98  Q
    |||||||||||||||||||||||| ||||||||||||||||   |  ||| ||  |||| |||||||| ||||||  ||||| |||| ||||||||||||    
T  17303123 ttgcaatttcttatgtaaattcctatgaatttcttatataa---acccttgta--aattgggcaatttctttagattttttttatta-tttgcttgcaat 17303216  T
Q  99 ttctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    |||| |||||| || ||| |||||||||||||    
T  17303217 ttcttatgtaaaccactataaatgtgttgcaa 17303248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 24320448 - 24320572
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| |||||||||||  ||||||||||||||||     |  |||| |||| |||||||| |||| |||||| ||||||| |||||||||||    
T  24320448 ttgcaatttcttgtgtaaattcctacgaatttcttatataaa-----cccctataaattgggcaatttctttacattttttattattt-gcttgcaattt 24320541  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaaa 132  Q
    || |||| || ||||| |||||||||||||||    
T  24320542 cttatgt-acgccctataaatgtgttgcaaaa 24320572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 44164752 - 44164875
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| |||||||| || |||||||||||||||||     |  |||| |||| |||||||| |||| |||||| ||||||| |||||||||||    
T  44164752 ttgcaatttcttgtgtaaatttctatgaatttcttatataaa-----cccctataaattgggcaatttctttacattttttattattt-gcttgcaattt 44164845  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  44164846 cttatgt-acgccctataaatgtgttgcaaa 44164875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 34707235 - 34707113
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||||||     |  |||| |||| |||||||| |||| |||||| ||||||| |||||||||||    
T  34707235 ttgcaatttcttgtgtaaatccctatgaatttcttatataaa-----cccctataaattgggcaatttctttacattttttattattt-gcttgcaattt 34707142  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    || |||| || ||||| |||||||||||||    
T  34707141 cttatgt-acgccctataaatgtgttgcaa 34707113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 26284387 - 26284510
Alignment:
Q  1 ttgcaatttcttatgtaaattcc-tgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaatt 99  Q
    ||||||||||||||||||| ||| | |||||||||||||      |||||  ||| |||| | |||||| ||||||||||| |||||||| |||||||||    
T  26284387 ttgcaatttcttatgtaaaatccctctgaatttcttata------aaactagtataaattggacaatttctttagattttttattatttt-cttgcaatt 26284479  T
Q  100 tctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    |||  ||||| |||||| |||||||||||||    
T  26284480 tcttttgtaaacccctataaatgtgttgcaa 26284510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 29555951 - 29556071
Alignment:
Q  4 caatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaatttcta 103  Q
    ||||||||| ||||||||||| |||||||||||||     |||||  |||| |||| | |||||| |||| |||||| |||| ||||||||||||||||     
T  29555951 caatttcttgtgtaaattcctatgaatttcttata-----taaacccctataaattggacaatttctttacattttttatta-tttgcttgcaatttctt 29556044  T
Q  104 atgtaaccccctaaaaatgtgttgcaaa 131  Q
    |||| || ||||| ||||||||||||||    
T  29556045 atgt-acgccctataaatgtgttgcaaa 29556071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 29981122 - 29981223
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||     ||||||||||| |||| | |||||| |||| |||||| |||| ||||||||||||||    
T  29981122 ttgcaatttcttgtgtaaatccctatgaatttcttata-----taaacttctataaattggacaatttctttatattttttatta-tttgcttgcaattt 29981215  T
Q  101 ctaatgta 108  Q
    || |||||    
T  29981216 cttatgta 29981223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 10576792 - 10576669
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||     |||||  |||| |||| |||||||| |||| |||||| |||| ||||||||||||||    
T  10576792 ttgcaatttcttgtgtaaatccctatgaatttcttata-----taaacccctataaattgggcaatttctttacattttttatta-tttgcttgcaattt 10576699  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| |||||| |||||||    
T  10576698 cttatgt-acgccctataaatgtattgcaaa 10576669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 15017892 - 15017851
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  15017892 ttgcaatttcttatgtaaattcctctgaatttcttatataaa 15017851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43342529 - 43342488
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  43342529 ttgcaatttcttatgtaaattcctctgaatttcttatataaa 43342488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 34259637 - 34259536
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||     |||||  |||| |||| |||||||| |||| |||||| |||| ||||||||||||||    
T  34259637 ttgcaatttcttgtgtaaatccctatgaatttcttata-----taaacccctataaattgggcaatttctttacattttttatta-tttgcttgcaattt 34259544  T
Q  101 ctaatgta 108  Q
    || |||||    
T  34259543 cttatgta 34259536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19334569 - 19334610
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  19334569 ttgcaatttcttatgtaaatacctatgaatttcttatataaa 19334610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29238152 - 29238193
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    |||||||||||| ||||||| ||| |||||||||||||||||    
T  29238152 ttgcaatttcttgtgtaaatccctatgaatttcttatataaa 29238193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 33057669 - 33057706
Alignment:
Q  4 caatttcttatgtaaattcctgtgaatttcttatataa 41  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  33057669 caatttcttatgtaaatccctatgaatttcttatataa 33057706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 25954869 - 25954746
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||||||| |||||||||||||||||     || |||| |||| |||||||| |||| |||||| ||||||| |||||||||||    
T  25954869 ttgcaatttcttgtgtaaattcctatgaatttcttatataaa-----ctcctataaattgggcaatttctttacattttttattattt-gcttgcaattt 25954776  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  25954775 cttatgt-acgccctataaatgtgttgcaaa 25954746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 17888562 - 17888683
Alignment:
Q  4 caatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttg-attattttgcttgcaatttct 102  Q
    ||||||||||||||||||||| ||||||||||||||||      |  |||| |||| |||||||| |||||||||||  ||||||| |||||||||||||    
T  17888562 caatttcttatgtaaattcctatgaatttcttatataac-----cccctataaattgggcaatttctttagatttttttattattt-gcttgcaatttct 17888655  T
Q  103 aatgtaaccccctaaaaatgtgttgcaa 130  Q
     |||||| |||||| |||||||||||||    
T  17888656 tatgtaaacccctataaatgtgttgcaa 17888683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 31377506 - 31377385
Alignment:
Q  4 caatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaatttcta 103  Q
    ||||||||||||||||| ||| ||||||||||||||||      | ||||| |||| |||||||| ||||||||||| |    ||||||||||||||||     
T  31377506 caatttcttatgtaaatccctatgaatttcttatataac-----cctctataaattgggcaatttctttagattttttaactatttgcttgcaatttctt 31377412  T
Q  104 atgtaaccccctaaaaatgtgttgcaa 130  Q
    |||||| || ||| |||||||||||||    
T  31377411 atgtaaaccgctataaatgtgttgcaa 31377385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 1535890 - 1535767
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||     |||||  |||| |||| |||||||| |||| |||||| |||| ||||||||||||||    
T  1535890 ttgcaatttcttgtgtaaatccctatgaatttcttata-----taaacccctataaattgggcaatttctttacattttttatta-tttgcttgcaattt 1535797  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| |  ||||| ||||||||||||||    
T  1535796 cttatgt-atgccctataaatgtgttgcaaa 1535767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 9742545 - 9742661
Alignment:
Q  4 caatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttaga-tttttgattattttgcttgcaatttct 102  Q
    ||||||||||||||||||||| |||||||||||||     | |||  |||| |||| |||||||| |||||| |||||||||||||| | ||||||||||    
T  9742545 caatttcttatgtaaattcctctgaatttcttata-----ttaacccctataaattgggcaatttctttagattttttgattatttt-catgcaatttct 9742638  T
Q  103 aatgtaaccccctaaaaatgtgt 125  Q
     |||||| | |||| ||||||||    
T  9742639 tatgtaaacacctataaatgtgt 9742661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 49284476 - 49284353
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||     |||||  |||| |||| |||||||| |||| |||||| |||| |||| |||||||||    
T  49284476 ttgcaatttcttgtgtaaatccctatgaatttcttata-----taaacccctataaattgggcaatttctttacattttttatta-tttgtttgcaattt 49284383  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  49284382 cttatgt-acgccctataaatgtgttgcaaa 49284353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19124747 - 19124788
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  19124747 ttgcaatttcttatgtaaattcctctgaatttcttatataaa 19124788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 46474113 - 46474072
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  46474113 ttgcaatttcttatgtaaattcctgtgaattttttatataaa 46474072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 34241112 - 34240988
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| |||| || ||| |||||||||||||||||     |  |||| |||| |||||||| |||| |||||| ||||||| |||||||||||    
T  34241112 ttgcaatttcttgtgtagatccctatgaatttcttatataaa-----cccctataaattgggcaatttctttacattttttattattt-gcttgcaattt 34241019  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaaa 132  Q
    || |||| || ||||| |||||||||| ||||    
T  34241018 cttatgt-acgccctataaatgtgttgtaaaa 34240988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 11054575 - 11054448
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttag---atttttgattattttgcttgcaa 97  Q
    |||||||||||||||||||| ||| |||||||||||||     ||||| ||||| |||| |||||| | |||||    ||||| |||  |||||||||||    
T  11054575 ttgcaatttcttatgtaaatccctatgaatttcttata-----taaacctctataaattgggcaatctctttagtattttttttatttatttgcttgcaa 11054481  T
Q  98 tttctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    ||||| |||||| ||  || |||||||||||||    
T  11054480 tttcttatgtaaacctttataaatgtgttgcaa 11054448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 20818686 - 20818570
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagat-ttttgattattttgcttgcaatt 99  Q
    |||||||||||| ||||||| ||| |||||||||||||||||     || |||| |||| | |||||| ||||||| ||||||||| |||| ||||||||    
T  20818686 ttgcaatttcttttgtaaatccctatgaatttcttatataaa-----ctcctataaattggtcaatttttttagattttttgatta-tttgtttgcaatt 20818593  T
Q  100 tctaatgtaaccccctaaaaatg 122  Q
    ||| |||||| || ||| |||||    
T  20818592 tcttatgtaaacctctataaatg 20818570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 37801273 - 37801396
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| |||||||| || ||||||| ||||||||||       |||| |||| ||||| || |||| |||||| ||||||| |||||||||||    
T  37801273 ttgcaatttcttgtgtaaatttctatgaattttttatataaatcc-----ctataaattgggcaaattctttacattttttattattt-gcttgcaattt 37801366  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  37801367 cttatgt-acgccctataaatgtgttgcaaa 37801396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 52632633 - 52632514
Alignment:
Q  5 aatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaatttctaa 104  Q
    |||||||| ||||||| ||| ||||||||||||||||||       |||| |||| |||||||| |||| |||||| | ||||| ||||||||||||| |    
T  52632633 aatttcttgtgtaaatccctatgaatttcttatataaatcc-----ctataaattgggcaatttctttacattttttaatattt-gcttgcaatttctta 52632540  T
Q  105 tgtaaccccctaaaaatgtgttgcaaa 131  Q
    ||| || ||||| ||||||||||||||    
T  52632539 tgt-acgccctataaatgtgttgcaaa 52632514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 47084131 - 47084090
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  47084131 ttgcaatttcttatgtaaatttctctgaatttcttatataaa 47084090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 10094406 - 10094495
Alignment:
Q  5 aatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttaga-tttttgattattttgcttgcaatt 99  Q
    ||||||||||||||||| || |||||||||||||     |||||  |||| |||| || |||||||||||| |||||||||| |||||||||||||    
T  10094406 aatttcttatgtaaatttctctgaatttcttata-----taaacccctataaattgggtaatttatttagattttttgatta-tttgcttgcaatt 10094495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 12792244 - 12792365
Alignment:
Q  5 aatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagattttt-gattattttgcttgcaatttcta 103  Q
    ||||||||||||||||| || |||||||||||||     |||||  |||| |||| |||||||  ||||||||||| ||||| |||||||| |||||||     
T  12792244 aatttcttatgtaaatttctctgaatttcttata-----taaacccctataaattgggcaattactttagatttttagatta-tttgcttgaaatttctt 12792337  T
Q  104 atgtaaccccctaaaaatgtgttgcaaa 131  Q
    || ||| |  ||| ||||||||||||||    
T  12792338 atataaacatctataaatgtgttgcaaa 12792365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 46583554 - 46583651
Alignment:
Q  5 aatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaatttctaa 104  Q
    ||||| || ||||||| ||| |||||||||||||||||     |  |||| ||||||||||||| |||| |||||| |||| |||||||||||||||| |    
T  46583554 aattttttgtgtaaatccctatgaatttcttatataaa-----cccctataaattaggcaatttctttacattttttatta-tttgcttgcaatttctta 46583647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50328915 - 50328874
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    |||||||||||| ||||||||||| | |||||||||||||||    
T  50328915 ttgcaatttcttttgtaaattcctcttaatttcttatataaa 50328874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 16338309 - 16338375
Alignment:
Q  62 gcaatttatttagatttttgattattttgcttgcaatttctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    ||||||| |||| |||||| ||||||| ||||||||||||| |||| || ||||| |||||||||||||    
T  16338309 gcaatttctttacattttttattattt-gcttgcaatttcttatgt-acgccctataaatgtgttgcaa 16338375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 35322770 - 35322837
Alignment:
Q  63 caatttatttagattttt-gattattttgcttgcaatttctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    |||||| ||||||||||| |||||||| ||||||||||||| || ||| |||||| ||| |||||||||    
T  35322770 caatttctttagattttttgattattt-gcttgcaatttcttatataaacccctataaaagtgttgcaa 35322837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 10156025 - 10156148
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||||||| |||||||||||||     ||||||||||| |||| | |||||| |||| |||||| |||| ||||||||||||||    
T  10156025 ttgcaatttcttgtgtaaattcctatgaatttcttata-----taaacttctataaattggacaatttctttatattttttatta-tttgcttgcaattt 10156118  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  10156119 cttatgt-acgccctataaatgtgttgcaaa 10156148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 42517303 - 42517430
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||||||  ||||  |||| |||| |||||||| |||| |||||| |||| ||||||||||||||    
T  42517303 ttgcaatttcttgtgtaaatccctatgaatttcttatataaa-caaacccctataaattgggcaatttctttacattttttatta-tttgcttgcaattt 42517400  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  42517401 cttatgt-acgccctataaatgtgttgcaaa 42517430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 38859967 - 38859849
Alignment:
Q  4 caatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttaga-tttttgattattttgcttgcaatttct 102  Q
    ||||||||||||||||||||| |||||||||||||     |||||  |||| |||| |||||||| |||||| ||||| |||| ||||||||||||||||    
T  38859967 caatttcttatgtaaattcctatgaatttcttata-----taaacccctataaattgggcaatttttttagatttttttatta-tttgcttgcaatttct 38859874  T
Q  103 aatgtaaccccctaaaaatgtgttg 127  Q
     |||||| |||||| ||||||||||    
T  38859873 tatgtaaacccctataaatgtgttg 38859849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 10907657 - 10907781
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttaga-tttttgattattttgcttgcaatt 99  Q
    |||||||||||||||||||||||| |||||||||||||     |||||  |||| ||| || |||||| |||||| |||||||||| |||||||||||||    
T  10907657 ttgcaatttcttatgtaaattcctctgaatttcttata-----taaacccctataaatcagacaatttctttagattttttgatta-tttgcttgcaatt 10907750  T
Q  100 tctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    ||| |||||  | |||| |||||||||||||    
T  10907751 tcttatgtagacacctataaatgtgttgcaa 10907781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 26835457 - 26835332
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagattttt-gattattttgcttgcaatt 99  Q
    ||||||||| |||||||||||| | |||||||||||||||||     || |||| ||||   |||||| ||||||||||| |||||||| ||||||||||    
T  26835457 ttgcaatttattatgtaaattcatatgaatttcttatataaa-----ctcctataaattgaacaatttttttagattttttgattattt-gcttgcaatt 26835364  T
Q  100 tctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    ||| |||||| ||| || ||||||||||||||    
T  26835363 tctcatgtaaacccatataaatgtgttgcaaa 26835332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 7742788 - 7742911
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| | | |||||||||||||||||     |  |||| |||| |||||||| |||| |||||| ||||||| |||||||||||    
T  7742788 ttgcaatttcttgtgtaaatccttatgaatttcttatataaa-----cccctataaattgggcaatttctttacattttttattattt-gcttgcaattt 7742881  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  7742882 cttatgt-acgccctataaatgtgttgcaaa 7742911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 48392415 - 48392538
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||       |||| |||| ||||||||  ||| |||||| |||| ||||||||||||||    
T  48392415 ttgcaatttcttgtgtaaatccctatgaatttcttatataaat-----ccctataaattgggcaatttcattacattttttatta-tttgcttgcaattt 48392508  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  48392509 cttatgt-acgccctataaatgtgttgcaaa 48392538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 49902587 - 49902464
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||||||     |  |||| |||  |||||||| |||| |||||| ||||||| |||||||||||    
T  49902587 ttgcaatttcttgtgtaaatccctatgaatttcttatataaa-----cccctataaatagggcaatttctttacattttttattattt-gcttgcaattt 49902494  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  49902493 cttatgt-acgccctataaatgtgttgcaaa 49902464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 5975104 - 5974988
Alignment:
Q  4 caatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaatttcta 103  Q
    ||||||||| ||||||| |||  ||||||||||||||||     |  |||| ||||||||||||| |||| |||||| |||| ||||||||||||||||     
T  5975104 caatttcttgtgtaaatccctaagaatttcttatataaa-----cccctataaattaggcaatttctttacattttttatta-tttgcttgcaatttctt 5975011  T
Q  104 atgtaaccccctaaaaatgtgttg 127  Q
    |||| || ||||| ||||||||||    
T  5975010 atgt-acgccctataaatgtgttg 5974988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 3346905 - 3346782
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    ||||||||| || ||||||| ||| |||||||||||||||||     |  |||| |||| | |||||| |||| |||||| ||||||| |||||||||||    
T  3346905 ttgcaatttgttgtgtaaatccctatgaatttcttatataaa-----cccctataaattggacaatttctttacattttttattattt-gcttgcaattt 3346812  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  3346811 cttatgt-acgccctataaatgtgttgcaaa 3346782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 47022821 - 47022698
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| |||||||  || |||||||||||||||||     || |||| ||||||||||||| |||| |||||| |||| ||| |||| |||||    
T  47022821 ttgcaatttcttgtgtaaatctctatgaatttcttatataaa-----ctcctataaattaggcaatttctttatattttttatta-tttacttgtaattt 47022728  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| |||| |||||||||    
T  47022727 cttatgt-acgccctataaatatgttgcaaa 47022698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 14796995 - 14796871
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagattttt-gattattttgcttgcaatt 99  Q
    ||||||||| |||||||||||||| |||||||||||||||    | |||  ||| |||||||| |||  ||||||||||| || || |||||||||||||    
T  14796995 ttgcaattttttatgtaaattcctctgaatttcttatata---cacact--tataaattaggccattactttagatttttcgaata-tttgcttgcaatt 14796902  T
Q  100 tctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    ||| |||||| ||| || |||||| ||||||    
T  14796901 tcttatgtaaacccgtataaatgtattgcaa 14796871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 14805869 - 14805745
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagattttt-gattattttgcttgcaatt 99  Q
    ||||||||| |||||||||||||| |||||||||||||||    | |||  ||| |||||||| |||  ||||||||||| || || |||||||||||||    
T  14805869 ttgcaattttttatgtaaattcctctgaatttcttatata---cacact--tataaattaggccattactttagatttttcgaata-tttgcttgcaatt 14805776  T
Q  100 tctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    ||| |||||| ||| || |||||| ||||||    
T  14805775 tcttatgtaaacccgtataaatgtattgcaa 14805745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42456691 - 42456650
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  42456691 ttgctatttcttatgtaaattcctatgaatttcttatataaa 42456650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 37189759 - 37189717
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaat 43  Q
    ||||||||||||||||||||  || ||||||||||||||||||    
T  37189759 ttgcaatttcttatgtaaatctctatgaatttcttatataaat 37189717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 30252799 - 30252875
Alignment:
Q  51 ctatgaattaggcaatttatttagattttt-gattattttgcttgcaatttctaatgtaaccccctaaaaatgtgttg 127  Q
    |||| |||||| ||| || ||||||||||| |||||||| ||||||||||||| |||||| |||||| |||| |||||    
T  30252799 ctataaattagacaacttctttagattttttgattattt-gcttgcaatttcttatgtaaacccctataaatatgttg 30252875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 13103127 - 13103246
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagattttt-gattattttgcttgcaatt 99  Q
    ||||||||| |||||||||||||| |||||||||||||||||     | | ||| |||| |||||||| ||||||||||| |||||||| ||||||||||    
T  13103127 ttgcaattttttatgtaaattcctctgaatttcttatataaa-----cctttataaattgggcaatttctttagattttttgattattt-gcttgcaatt 13103220  T
Q  100 tctaatgtaaccccctaaaaatgtgt 125  Q
    |||||||||| | |||| ||||||||    
T  13103221 tctaatgtaaacacctataaatgtgt 13103246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 24694660 - 24694783
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||||||     || |||| |||| |||||||| |||| |||||| ||||||| |||||||||||    
T  24694660 ttgcaatttcttgtgtaaatccctatgaatttcttatataaa-----ctcctataaattgggcaatttctttacattttttattattt-gcttgcaattt 24694753  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  24694754 cttatgt-acgccctataaatgtgttgcaaa 24694783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 14309807 - 14309930
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||       |||| |||| |||||||| |||| |||||| ||||||| |||||||||||    
T  14309807 ttgcaatttcttgtgtaaatccctatgaatttcttatataaatcc-----ctataaattgggcaatttctttacattttttattattt-gcttgcaattt 14309900  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  14309901 cttatgt-acgccctataaatgtgttgcaaa 14309930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 28750659 - 28750783
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttattt-agatttttgattattttgcttgcaatt 99  Q
    |||||||||||||||||||||| | |||||||||||||     |||||  |||| |||| |||||||| ||| |  |||||||||| |||||||| ||||    
T  28750659 ttgcaatttcttatgtaaattcttctgaatttcttata-----taaacccctataaattgggcaatttctttaatttttttgatta-tttgcttgtaatt 28750752  T
Q  100 tctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    ||| |||||| | | || |||||||||||||    
T  28750753 tcttatgtaaactcttataaatgtgttgcaa 28750783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11084709 - 11084668
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  11084709 ttgcaatttcttgtgtaaattcctatgaatttcttatataaa 11084668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 27863812 - 27863694
Alignment:
Q  7 tttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaatttctaatg 106  Q
    ||||||||||||||| || |||||||||||||||||     |   ||| |||| | |||||| ||||||||||| ||||||| | ||||||||||| |||    
T  27863812 tttcttatgtaaatttctctgaatttcttatataaa-----cccttataaattggacaatttctttagattttttattattt-gtttgcaatttcttatg 27863719  T
Q  107 taaccccctaaaaatgtgttgcaaa 131  Q
    ||| |  ||| ||||||||||||||    
T  27863718 taaacatctataaatgtgttgcaaa 27863694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 11279601 - 11279536
Alignment:
Q  64 aatttatttagatttttgattattttgcttgcaatttctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    ||||| ||||||||||| ||||||| ||||||||||||| ||||||  | ||| |||||||||||||    
T  11279601 aatttctttagattttttattattt-gcttgcaatttcttatgtaaatctctataaatgtgttgcaa 11279536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1727942 - 1727983
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    |||||||||||| ||||||| ||| |||||||||||||||||    
T  1727942 ttgcaatttcttgtgtaaatccctatgaatttcttatataaa 1727983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 11212745 - 11212669
Alignment:
Q  51 ctatgaattaggcaatttatttagatttttgattattttgcttgcaatttctaatgtaaccccctaaaaatgtgttgc 128  Q
    |||| |||| |||||||| ||||||||||| |||| |||||||| ||||||| ||||||   |||| |||||||||||    
T  11212745 ctataaattgggcaatttctttagatttttaatta-tttgcttgtaatttcttatgtaaattcctataaatgtgttgc 11212669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13627659 - 13627618
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    |||||||||||| ||||||| ||| |||||||||||||||||    
T  13627659 ttgcaatttcttgtgtaaatccctatgaatttcttatataaa 13627618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24497583 - 24497624
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    ||||||||| || ||||||||||| |||||||||||||||||    
T  24497583 ttgcaattttttgtgtaaattcctctgaatttcttatataaa 24497624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 34103800 - 34103763
Alignment:
Q  5 aatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  34103800 aatttattatgtaaattcctctgaatttcttatataaa 34103763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 33934378 - 33934502
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||||||| |||||||||||||     |||||  |||| |||| |||||||| |||| |||||| |||| ||||||||||||||    
T  33934378 ttgcaatttcttttgtaaattcctatgaatttcttata-----taaacccctataaattgggcaatttttttatattttttatta-tttgcttgcaattt 33934471  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaaa 132  Q
    || |||| || ||||| |||||||||||||||    
T  33934472 cttatgt-acgccctataaatgtgttgcaaaa 33934502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 42013991 - 42013872
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||||||     || |||| |||| |||||||| |||| |||||| ||||||| |||||||||||    
T  42013991 ttgcaatttcttgtgtaaatccctatgaatttcttatataaa-----ctcctataaattgggcaatttctttatattttttattattt-gcttgcaattt 42013898  T
Q  101 ctaatgtaaccccctaaaaatgtgttg 127  Q
    || |||| || ||||| ||||||||||    
T  42013897 cttatgt-acgccctataaatgtgttg 42013872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 21525477 - 21525354
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||     |||||  |||| |||| | |||||| |||| |||||| |||| ||||||||||||||    
T  21525477 ttgcaatttcttgtgtaaatccctatgaatttcttata-----taaacccctataaattggacaatttctttacattttttatta-tttgcttgcaattt 21525384  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  21525383 cttatgt-acgccctataaatgtgttgcaaa 21525354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 35806913 - 35806790
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| |||||||  || |||||||||||||||||     |  |||| |||| |||||||| |||| |||||| ||||||| |||||||||||    
T  35806913 ttgcaatttcttgtgtaaatctctatgaatttcttatataaa-----cccctataaattgggcaatttctttacattttttattattt-gcttgcaattt 35806820  T
Q  101 ctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    || |||| || ||||| ||||||||||||||    
T  35806819 cttatgt-acaccctataaatgtgttgcaaa 35806790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 22324711 - 22324593
Alignment:
Q  5 aatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaatttctaa 104  Q
    |||||||| ||||||| ||| |||||||||||||||||     |  |||| |||| |||||||| |||| |||||| ||||||| ||||||||||||| |    
T  22324711 aatttcttgtgtaaatccctatgaatttcttatataaa-----cccctataaattgggcaatttctttacattttttattattt-gcttgcaatttctta 22324618  T
Q  105 tgtaaccccctaaaaatgtgttgcaa 130  Q
    ||| || ||||| |||||||||||||    
T  22324617 tgt-acgccctataaatgtgttgcaa 22324593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 24065392 - 24065290
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    ||||||||||| || |||||  || |||||||||||||||||     || |||| |||| |||||||| ||||| ||||| ||||||| |||||||||||    
T  24065392 ttgcaatttctcatataaatctctatgaatttcttatataaa-----ctcctataaattgggcaatttctttagcttttttattattt-gcttgcaattt 24065299  T
Q  101 ctaatgtaa 109  Q
    || ||||||    
T  24065298 cttatgtaa 24065290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 42072547 - 42072445
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttagatttttgattattttgcttgcaattt 100  Q
    |||||||||||| ||||||| ||| |||||||||||||     |||||  |||| |||| | |||||| |||| |||||| |||| ||||||||||||||    
T  42072547 ttgcaatttcttgtgtaaatccctatgaatttcttata-----taaacccctataaattggacaatttctttacattttttatta-tttgcttgcaattt 42072454  T
Q  101 ctaatgtaa 109  Q
    || ||||||    
T  42072453 cttatgtaa 42072445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 26021515 - 26021391
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaattaaacttctatgaattaggcaatttatttaga-tttttgattattttgcttgcaatt 99  Q
    |||||||||||| ||||||| ||| |||||||||||||     |||||  |||| |||| || ||||| |||| | ||||| |||| |||||||||||||    
T  26021515 ttgcaatttcttttgtaaatccctatgaatttcttata-----taaacccctataaattgggtaatttctttacatttttttatta-tttgcttgcaatt 26021422  T
Q  100 tctaatgtaaccccctaaaaatgtgttgcaaa 131  Q
    ||| |||| || ||||| ||||||||||||||    
T  26021421 tcttatgt-acgccctataaatgtgttgcaaa 26021391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16591384 - 16591426
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaat 43  Q
    ||||||||||||||||||||| ||  |||||||||||||||||    
T  16591384 ttgcaatttcttatgtaaatttctaagaatttcttatataaat 16591426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10112166 - 10112125
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    ||||||||| |||||||||||||| | |||||||||||||||    
T  10112166 ttgcaattttttatgtaaattcctcttaatttcttatataaa 10112125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2824191 - 2824231
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataa 41  Q
    ||||||||| |||||||||||||| | ||||||||||||||    
T  2824191 ttgcaattttttatgtaaattcctctaaatttcttatataa 2824231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20840 - 20881
Alignment:
Q  1 ttgcaatttcttatgtaaattcctgtgaatttcttatataaa 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  20840 ttgcaatttcttatgtaaattcctctgaatttcttatataaa 20881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 54551 - 54485
Alignment:
Q  62 gcaatttatttagatttttgattattttgcttgcaatttctaatgtaaccccctaaaaatgtgttgcaa 130  Q
    ||||||| |||| |||||| ||||||| ||||||||||||| |||| || ||||| |||||||||||||    
T  54551 gcaatttctttacattttttattattt-gcttgcaatttcttatgt-acgccctataaatgtgttgcaa 54485  T

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