View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3597_low_19 (Length: 238)

Name: NF3597_low_19
Description: NF3597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3597_low_19
NF3597_low_19
[»] chr4 (2 HSPs)
chr4 (18-236)||(10441229-10441449)
chr4 (193-236)||(28690067-28690110)
[»] chr5 (3 HSPs)
chr5 (18-236)||(5712311-5712531)
chr5 (18-236)||(36768584-36768804)
chr5 (20-236)||(33403279-33403489)
[»] chr2 (3 HSPs)
chr2 (117-236)||(25898548-25898666)
chr2 (18-91)||(25898659-25898732)
chr2 (193-236)||(31922011-31922054)
[»] chr3 (2 HSPs)
chr3 (18-90)||(30459981-30460054)
chr3 (147-236)||(30459891-30459974)
[»] chr7 (2 HSPs)
chr7 (147-235)||(22337797-22337879)
chr7 (193-236)||(22619609-22619652)
[»] chr8 (1 HSPs)
chr8 (193-236)||(11146855-11146897)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 10441449 - 10441229
Alignment:
Q  18 tctatttcctcaaccgttttgcagttcacgttattggtcaattttccatgctagacaatgcttaattatgtgatactc--ctattggttgttcatgtgga 115  Q
    |||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||    
T  10441449 tctatttcctcagccgttttgcagttcacgttattggctaattttccatgctagacaatgcttaattatgtgatactcttctattggttgttcctgtgga 10441350  T
Q  116 gtattggattagctacatgaagtagtaactcaagcatgcttggcactcaatggagcagtaactgacacacnnnnnnnacatggagaccatacaagcaatt 215  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |       |||||||||||||||||||||||    
T  10441349 gtattggattagctacgtgaagtagtaacttaagcatgcttggcactcaatggagcagtaactgacacgctttttttacatggagaccatacaagcaatt 10441250  T
Q  216 ataaggggtaaaattgtcaaa 236  Q
    ||||| |||||||||||||||    
T  10441249 ataagaggtaaaattgtcaaa 10441229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 28690067 - 28690110
Alignment:
Q  193 acatggagaccatacaagcaattataaggggtaaaattgtcaaa 236  Q
    ||||||||| |||||||||||||||||||| |||||||||||||    
T  28690067 acatggagatcatacaagcaattataagggataaaattgtcaaa 28690110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 5712531 - 5712311
Alignment:
Q  18 tctatttcctcaaccgttttgcagttcacgttattggtcaattttccatgctagacaatgcttaattatgtgatactc--ctattggttgttcatgtgga 115  Q
    |||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||  ||||||||||||| ||||||    
T  5712531 tctatttcctcagccgttttgcagttcacgttattggccaatttttcatgctagacaatgcttaattatgtgatactcttctattggttgttcctgtgga 5712432  T
Q  116 gtattggattagctacatgaagtagtaactcaagcatgcttggcactcaatggagcagtaactgacacacnnnnnnnacatggagaccatacaagcaatt 215  Q
    |||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  5712431 gtattggattagctaggtgaagtagtaacttaagcatgcttggcactcaatggagcagtaactgacacactttttttacatggagaccatacaagcaatt 5712332  T
Q  216 ataaggggtaaaattgtcaaa 236  Q
    |||| |||| |||||||||||    
T  5712331 ataaagggtgaaattgtcaaa 5712311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 36768584 - 36768804
Alignment:
Q  18 tctatttcctcaaccgttttgcagttcacgttattggtcaattttccatgctagacaatgcttaattatgtgatactc--ctattggttgttcatgtgga 115  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||    
T  36768584 tctatttcctaagccgttttgcagttcacgttattggccaattttccatgctagacaatgcttaattatgtgatactcttctattggttgttcttgtgga 36768683  T
Q  116 gtattggattagctacatgaagtagtaactcaagcatgcttggcactcaatggagcagtaactgacacacnnnnnnnacatggagaccatacaagcaatt 215  Q
    |||||||||||||||| ||||||||||||| |||||| |||| ||||||||||||||||||| |||||||       |||||||||||||||||||||||    
T  36768684 gtattggattagctacgtgaagtagtaacttaagcatacttgacactcaatggagcagtaaccgacacactttttttacatggagaccatacaagcaatt 36768783  T
Q  216 ataaggggtaaaattgtcaaa 236  Q
    |||||||||||||||||||||    
T  36768784 ataaggggtaaaattgtcaaa 36768804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 33403489 - 33403279
Alignment:
Q  20 tatttcctcaaccgttttgcagttcac-gttattggtcaattttccatgctagacaatgcttaattatgtgatactc--ctattggttgttcatgtggag 116  Q
    |||||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  33403489 tatttcatcagccgttttgcagttcacagttattggccaattttccatgctagacaatgcttaattatgtgatactcttctattggttgttcatgtggag 33403390  T
Q  117 tattgga--ttagctacatgaagtagtaactcaagcatgcttggcactcaatggagcagtaactgacacacnnnnnnnacatggagaccatacaagcaat 214  Q
    ||| |||  |||||||| || || |||     ||||||||||||||||||||||||      ||| |||||       ||||||||||||||||||||||    
T  33403389 tataggattttagctacgtggagcagt-----aagcatgcttggcactcaatggag------ctgtcacactttttttacatggagaccatacaagcaat 33403301  T
Q  215 tataaggggtaaaattgtcaaa 236  Q
    ||||||||||||||||||||||    
T  33403300 tataaggggtaaaattgtcaaa 33403279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 25898666 - 25898548
Alignment:
Q  117 tattggattagctacatgaagtagtaactcaagcatgcttggcactcaatggagcagtaactgacacacnnnnnnnacatggagaccatacaagcaatta 216  Q
    |||| |||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||    
T  25898666 tatttgattagctacgtgaagtagtaacttaagcatgcttggcactcaatggagtagtaactgacacac-ttttttacatggagaccatacaagcaatta 25898568  T
Q  217 taaggggtaaaattgtcaaa 236  Q
    ||||| |||||||| |||||    
T  25898567 taaggagtaaaattatcaaa 25898548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 25898732 - 25898659
Alignment:
Q  18 tctatttcctcaaccgttttgcagttcacgttattggtcaattttccatgctagacaatgcttaattatgtgat 91  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  25898732 tctatttcctcaaccgttttgcagttcacgttattggccaattttccatgctagacaatgcttaattatttgat 25898659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 31922011 - 31922054
Alignment:
Q  193 acatggagaccatacaagcaattataaggggtaaaattgtcaaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  31922011 acatggagaccatacaagcaattataaggggtaaaattgtcaaa 31922054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 30460054 - 30459981
Alignment:
Q  18 tctatttcctcaaccgttttgcagttcac-gttattggtcaattttccatgctagacaatgcttaattatgtga 90  Q
    |||||||||| | |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||    
T  30460054 tctatttccttagccgttttgcagttcacagttattggccaattttccatgctagacaatgcttaattacgtga 30459981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 30459974 - 30459891
Alignment:
Q  147 aagcatgcttggcactcaatggagcagtaactgacacacnnnnnnnacatggagaccatacaagcaattataaggggtaaaattgtcaaa 236  Q
    |||||||||||||||||||||||||      ||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  30459974 aagcatgcttggcactcaatggagc------tgacacactttttttacatggagaccatacaagcaattataaggggtaaaattgtcaaa 30459891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 22337879 - 22337797
Alignment:
Q  147 aagcatgcttggcactcaatggagcagtaactgacacacnnnnnnnacatggagaccatacaagcaattataaggggtaaaattgtcaa 235  Q
    |||||||||||||||||||||||||      ||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  22337879 aagcatgcttggcactcaatggagc------tgacacactttttttacatggagaccatacaagcaattataaggggtaaaattgtcaa 22337797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 22619652 - 22619609
Alignment:
Q  193 acatggagaccatacaagcaattataaggggtaaaattgtcaaa 236  Q
    ||||||||||||||| ||||||||||||| || |||||||||||    
T  22619652 acatggagaccatactagcaattataaggagtcaaattgtcaaa 22619609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 11146897 - 11146855
Alignment:
Q  193 acatggagaccatacaagcaattataaggggtaaaattgtcaaa 236  Q
    |||||||| |||||||||||||||||||| ||||||||||||||    
T  11146897 acatggag-ccatacaagcaattataaggagtaaaattgtcaaa 11146855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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