View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3597_low_2 (Length: 666)
Name: NF3597_low_2
Description: NF3597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3597_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 185 - 656
Target Start/End: Original strand, 20527459 - 20527929
Alignment:
| Q |
185 |
atattgttgatgagtggtcttgatatgtttcgatgaattttttgccttgaggttgtattaaagttgaacnnnnnnnggtttattccatgtgtatcttgtg |
284 |
Q |
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| T |
20527459 |
atattgttgaggagcgg-cttgatatgtttcgatcatttttttgccttgagagtgtattaaggttgaactctttttggtttattccatgagtatcttgtg |
20527557 |
T |
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| Q |
285 |
cttagaatagagttttcacctcaatgacgcaatgctctctaggaataattttggatttgtgtttcatatcagccaaagcatcttttgagttcaacattac |
384 |
Q |
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| T |
20527558 |
cttagaatagagttttcaccttagtgacgccttgctgtctaggaatgattttggatttgtgtttcatatcagccaaagcatcttttgagttcaacattac |
20527657 |
T |
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| Q |
385 |
aacgatctaacataattacaaaacattgacacagtcttttatagttccctaaacaatttaatcctattaatgaacatctttgagtcaccaaactcaaaga |
484 |
Q |
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| T |
20527658 |
aacaatctaacataattacaaaacattgacacagtcttttatagttccttaaacaatttcatcctattaatgaacatctttgagtcaccaaactcaaaga |
20527757 |
T |
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| Q |
485 |
agcttgtaaatggtgccaaattaataaaatgaaactttaatgattatatagtaactccgtcaattctaagagcacaaacaagtggattgaagagagttga |
584 |
Q |
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| T |
20527758 |
agcttgtaaatggtgccaaattaataaaatgaaactttaatgattatatagtaactccgccaattctaagagcacaaacaagtggattgaagagagttga |
20527857 |
T |
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| Q |
585 |
ggcgtcttcaaagttcacacacgcaatcgatacgattaaacaacacacaaaaagaagtcgtatatgtctctg |
656 |
Q |
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| T |
20527858 |
ggcctcttcaaagttcacacacgtaatcgataccgttaaacaacacacaaaaagaagttgtatatgtctctg |
20527929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 8 - 187
Target Start/End: Original strand, 20527176 - 20527355
Alignment:
| Q |
8 |
aaatacaccctctttgcatttttataagcactcattgacattttccggctttgttttgtcttgtgattcatgatgcaattgacagaaatttactcaagca |
107 |
Q |
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|||||| ||||||||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||||||||||| |||||||||||| ||||| |
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| T |
20527176 |
aaatactccctctttgcatttttataagcactcattaaatttttccctctttgttttggcttgtgattcatgatgcaattgtcagaaatttactgaagca |
20527275 |
T |
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| Q |
108 |
aaggatgattgcaaagcaacaatgcacaatctgatggtaaataggcctgagttaaaatggtggctcggttttggtgaata |
187 |
Q |
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| T |
20527276 |
aaggatgattggaaagcaacaatgtacaatctgatggtaaataggcctgagttaaaatgtttgctcgtttttggtgaata |
20527355 |
T |
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