View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3597_low_5 (Length: 572)

Name: NF3597_low_5
Description: NF3597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3597_low_5
NF3597_low_5
[»] chr1 (9 HSPs)
chr1 (1-339)||(47583846-47584184)
chr1 (319-567)||(47583584-47583832)
chr1 (75-298)||(47574170-47574393)
chr1 (352-549)||(47573909-47574106)
chr1 (79-298)||(47567290-47567504)
chr1 (342-567)||(47567004-47567229)
chr1 (73-192)||(47626901-47627020)
chr1 (75-234)||(47698011-47698170)
chr1 (357-400)||(47592472-47592515)
[»] chr6 (9 HSPs)
chr6 (76-195)||(20236379-20236498)
chr6 (76-195)||(22206507-22206626)
chr6 (73-276)||(22086440-22086643)
chr6 (73-276)||(21968547-21968750)
chr6 (76-195)||(22130363-22130482)
chr6 (76-195)||(18996058-18996177)
chr6 (76-129)||(18979956-18980009)
chr6 (76-129)||(20084252-20084305)
chr6 (76-195)||(24386637-24386757)
[»] scaffold0074 (1 HSPs)
scaffold0074 (76-195)||(49282-49401)
[»] scaffold0007 (1 HSPs)
scaffold0007 (76-195)||(6828-6947)
[»] chr8 (1 HSPs)
chr8 (76-192)||(10401925-10402041)
[»] chr5 (1 HSPs)
chr5 (75-195)||(470366-470486)
[»] chr3 (1 HSPs)
chr3 (149-195)||(36067430-36067476)
[»] chr4 (1 HSPs)
chr4 (164-220)||(36370099-36370155)


Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 47584184 - 47583846
Alignment:
Q  1 gagttcaaataagaacggatccacaaaaggtaattcatttatcaagacatctagtttaaagtttagaaatgacataccaaatagaaagtaatcaagactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47584184 gagttcaaataagaacggatccacaaaaggtaattcatttatcaagacatctagtttaaagtttagaaatgacataccaaatagaaagtaatcaagactt 47584085  T
Q  101 ttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagatttctgtgttgaagcttggctataactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47584084 ttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagatttctgtgttgaagcttggctataactt 47583985  T
Q  201 gaacctcatttttaaactctactgcaccttgtccagagcttcttgtaagcctcttcacagcaacttcttgtccatccaaaagaactccctgaataacaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47583984 gaacctcatttttaaactctactgcaccttgtccagagcttcttgtaagcctcttcacagcaacttcttgtccatccaaaagaactccctgaataacaat 47583885  T
Q  301 nnnnnnngtcattatggactagattattgtttaatctag 339  Q
           ||| ||||||||||||||||||||||||||||    
T  47583884 aaaaaaagtcgttatggactagattattgtttaatctag 47583846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 319 - 567
Target Start/End: Complemental strand, 47583832 - 47583584
Alignment:
Q  319 ctagattattgtttaatctagtcctagttgatttatttaccttgtagacttctccaaatccacctttgcctatcctgttttctgcagcaaatctgtttgt 418  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47583832 ctagattattgtttaatctagtccttgttgatttatttaccttgtagacttctccaaatccacctttgcctatcctgttttctgcagcaaatctgtttgt 47583733  T
Q  419 tgctgcttcaattttggcaaattcaaattgtaacgattccaaagtggtaacatcatttccaactacaacaacacgtttgaattctataagttatatggct 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47583732 tgctgcttcaattttggcaaattcaaattgtaacgattccaaagtggtaacatcatttccaactacaacaacacgtttgaattctataagttatatggct 47583633  T
Q  519 aaaagaaatgcctctttttatatgcaaatagtagtatattcttcgacat 567  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  47583632 aaaagaaatgcctctttttatatgcaaatagtagtatatttttccacat 47583584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 75 - 298
Target Start/End: Complemental strand, 47574393 - 47574170
Alignment:
Q  75 taccaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagatt 174  Q
    ||||||||| ||||||||||||||| ||||| |||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  47574393 taccaaataaaaagtaatcaagactcttgtttggcacatactcaaagattagtatcttctcctcatcttccaaacaaaatcctagtaatcttactagatt 47574294  T
Q  175 tctgtgttgaagcttggctataacttgaacctcatttttaaactctactgcaccttgtccagagcttcttgtaagcctcttcacagcaacttcttgtcca 274  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||| ||||||||||    
T  47574293 tctgtgttgaagcttggctataacatgaacctcatttttaaactctactgcaccttgcccggagctacttgtaagcctcttcaccgcaatttcttgtcca 47574194  T
Q  275 tccaaaagaactccctgaataaca 298  Q
    |||||||||| |||||||| ||||    
T  47574193 tccaaaagaattccctgaacaaca 47574170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 352 - 549
Target Start/End: Complemental strand, 47574106 - 47573909
Alignment:
Q  352 tatttaccttgtagacttctccaaatccacctttgcctatcctgttttctgcagcaaatctgtttgttgctgcttcaattttggcaaattcaaattgtaa 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  47574106 tatttaccttgtagacttctccaaatccacctttgcctatcctgttatctgcagcaaatctgtttgttgctgcttcaatttcggcaaattcaaattgcaa 47574007  T
Q  452 cgattccaaagtggtaacatcatttccaactacaacaacacgtttgaattctataagttatatggctaaaagaaatgcctctttttatatgcaaatag 549  Q
     |||||||||| | |||  ||||| |||||||||  |||| |||| ||||||||||||||||||| |||| ||||||| ||||||| | |||||||||    
T  47574006 ggattccaaagagttaatgtcattcccaactacagaaacaagttttaattctataagttatatggttaaaggaaatgcatctttttgtttgcaaatag 47573909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 79 - 298
Target Start/End: Complemental strand, 47567504 - 47567290
Alignment:
Q  79 aaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagatttctg 178  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||   |||||||||| || ||||||||||||||||||||| |||     
T  47567504 aaataaaaagtaatcaagactcttgtttggcacatactcatagataagtatcttctc---atcttccaaataatatcctagtaatctcactagatgtcta 47567408  T
Q  179 tgttgaagcttggctataacttgaacctcatttttaaactctactgcaccttgtccagagcttcttgtaagcctcttcacagcaacttcttgtccatcca 278  Q
    ||||||||||||||||||||  ||||||||||||| ||||||  ||||||||| || |||||| | ||||| |||||| |||||| ||||||||||||||    
T  47567407 tgttgaagcttggctataacaagaacctcattttt-aactctgttgcaccttg-ccggagcttttcgtaagtctcttcgcagcaatttcttgtccatcca 47567310  T
Q  279 aaagaactccctgaataaca 298  Q
    |||||| |||||||| ||||    
T  47567309 aaagaattccctgaacaaca 47567290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 342 - 567
Target Start/End: Complemental strand, 47567229 - 47567004
Alignment:
Q  342 ctagttgatttatttaccttgtagacttctccaaatccacctttgcctatcctgttttctgcagcaaatctgtttgttgctgcttcaattttggcaaatt 441  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||  || ||||| | ||    
T  47567229 ctagttgatatatttaccttgtagacttctccaaatccacctttgcctttcctattttctgcagtaaatctgtttgttgctgcttggatattggctagtt 47567130  T
Q  442 caaattgtaacgattccaaagtggtaacatcatttccaactacaacaacacgtttgaattctataagttatatggctaaaagaaatgcctctttttatat 541  Q
    ||||||| || || ||||||| |||   |||||| |||||||||||||||  |||||||||||||||||| |||| |||| ||||||| || |||| | |    
T  47567129 caaattgcaaggactccaaagaggtcgtatcattcccaactacaacaacaattttgaattctataagttacatggttaaaggaaatgcttccttttgttt 47567030  T
Q  542 gcaaatagtagtatattcttcgacat 567  Q
    |||||||| |||||||| ||| ||||    
T  47567029 gcaaatagaagtatatttttctacat 47567004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 47627020 - 47626901
Alignment:
Q  73 cataccaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactaga 172  Q
    |||||||||||| |||| ||||||||||||||| |||||||| |||||||  |||||||| ||||  ||||| |  |||||||||| ||| ||||||| |    
T  47627020 cataccaaataggaagtgatcaagacttttgttaggcacatattcatagacgagtatcttttcttggtcttcaaggcaaaatcctattaacctcactaaa 47626921  T
Q  173 tttctgtgttgaagcttggc 192  Q
    |||||||||||||| |||||    
T  47626920 tttctgtgttgaagtttggc 47626901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 75 - 234
Target Start/End: Complemental strand, 47698170 - 47698011
Alignment:
Q  75 taccaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagatt 174  Q
    ||||||||||||||||||| ||||| ||||| | |||||| ||||| || || || |||||||   ||||||| ||||| |||| |||  |||| | |||    
T  47698170 taccaaatagaaagtaatcgagactcttgttggtcacatattcataaatgagcattttctcttggccttccaagcaaaaacctattaaagtcaccaaatt 47698071  T
Q  175 tctgtgttgaagcttggctataacttgaacctcatttttaaactctactgcaccttgtcc 234  Q
    ||| |||||||| ||||||||  ||  |||||||||||| |||||||||| |||||||||    
T  47698070 tctatgttgaagtttggctatctctaaaacctcatttttgaactctactgaaccttgtcc 47698011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 400
Target Start/End: Complemental strand, 47592515 - 47592472
Alignment:
Q  357 accttgtagacttctccaaatccacctttgcctatcctgttttc 400  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||    
T  47592515 accttgtaaacttctccaaatccacctttgccaatcttgttttc 47592472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 20236379 - 20236498
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagattt 175  Q
    |||||||||||||||||||||||| ||||| |||||| | ||||| |||||||| |||||||  ||||| |  |||||||| |  |||  ||||||||||    
T  20236379 accaaatagaaagtaatcaagactcttgttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaatccaataaatgccactagattt 20236478  T
Q  176 ctgtgttgaagcttggctat 195  Q
    || |||||||||||||||||    
T  20236479 ctatgttgaagcttggctat 20236498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 22206626 - 22206507
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagattt 175  Q
    |||||||||||||||||||||||| ||||| |||||| | ||||| |||||||| |||||||  ||||| |  |||||||| |  |||  ||||||||||    
T  22206626 accaaatagaaagtaatcaagactcttgttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaatccaataaatgccactagattt 22206527  T
Q  176 ctgtgttgaagcttggctat 195  Q
    || |||||||||||||||||    
T  22206526 ctatgttgaagcttggctat 22206507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 73 - 276
Target Start/End: Original strand, 22086440 - 22086643
Alignment:
Q  73 cataccaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactaga 172  Q
    ||||||||||| ||||||||||||||||||||| |  ||||| ||||| |||||||||||||| |   |||| |  ||||| || |  ||| | ||||||    
T  22086440 cataccaaataaaaagtaatcaagacttttgttggaaacatattcataaataagtatcttctcatgtccttcaaggcaaaaaccaataaatgtgactaga 22086539  T
Q  173 tttctgtgttgaagcttggctataacttgaacctcatttttaaactctactgcaccttgtccagagcttcttgtaagcctcttcacagcaacttcttgtc 272  Q
    ||||||||||||||||||||||| | |  ||  ||||| || |||||  || |||||||   ||| ||||||| ||||||||| | ||| |||||| |||    
T  22086540 tttctgtgttgaagcttggctatcaataaaatttcattcttgaactcctctacaccttgcttagaacttcttgaaagcctctttatagctacttctcgtc 22086639  T
Q  273 catc 276  Q
    ||||    
T  22086640 catc 22086643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 73 - 276
Target Start/End: Original strand, 21968547 - 21968750
Alignment:
Q  73 cataccaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactaga 172  Q
    ||||||||||| ||||||||||||||| ||||| |  ||||| ||||| |||||||||||||| |   |||| | |||||| || |  ||  ||||||||    
T  21968547 cataccaaataaaaagtaatcaagactcttgttggaaacatattcataaataagtatcttctcatgtccttcaagacaaaagccaataaaagtcactaga 21968646  T
Q  173 tttctgtgttgaagcttggctataacttgaacctcatttttaaactctactgcaccttgtccagagcttcttgtaagcctcttcacagcaacttcttgtc 272  Q
    ||||| ||||||||||||||||| | |  ||  ||||| || |||||  || |||||||   ||| ||||||| ||||||||| | ||| |||||| |||    
T  21968647 tttctatgttgaagcttggctatcaataaaatttcattcttgaactcctctacaccttgcttagaacttcttgaaagcctctttatagctacttctcgtc 21968746  T
Q  273 catc 276  Q
    ||||    
T  21968747 catc 21968750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 22130363 - 22130482
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagattt 175  Q
    |||||||||||||||||||||||| ||||| |||||| | ||||| |||||||| |||||||  ||||| |  ||||| || |  ||   ||||||||||    
T  22130363 accaaatagaaagtaatcaagactcttgttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaaaccaaaaaaagccactagattt 22130462  T
Q  176 ctgtgttgaagcttggctat 195  Q
    || |||||||||||||||||    
T  22130463 ctatgttgaagcttggctat 22130482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 18996058 - 18996177
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagattt 175  Q
    ||||||||||||| |||||||||| | ||| |||||| | ||||| |||||||| |||||||  ||||| |  ||||| || |  |||  ||||||||||    
T  18996058 accaaatagaaagaaatcaagactatagttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaaaccaataaatgccactagattt 18996157  T
Q  176 ctgtgttgaagcttggctat 195  Q
    || |||||||||||||||||    
T  18996158 ctatgttgaagcttggctat 18996177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 18979956 - 18980009
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtat 129  Q
    ||||||||||||| |||||||||||||||| |||||||| ||||| ||||||||    
T  18979956 accaaatagaaagaaatcaagacttttgtttggcacatattcataaataagtat 18980009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 20084252 - 20084305
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtat 129  Q
    ||||||||||||| |||||||||||||||| |||||||| ||||| ||||||||    
T  20084252 accaaatagaaagaaatcaagacttttgtttggcacatattcataaataagtat 20084305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 24386757 - 24386637
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcat-agataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagatt 174  Q
    ||||||||||||| |||||||||||||||| |||||||| | || | |||||||| |||||||  ||||| |  ||||| || |  ||    ||||||||    
T  24386757 accaaatagaaagaaatcaagacttttgtttggcacatatttataaaataagtattttctcttgttcttcaaggcaaaaaccaataaaagcaactagatt 24386658  T
Q  175 tctgtgttgaagcttggctat 195  Q
    ||| |||||||||||||||||    
T  24386657 tctatgttgaagcttggctat 24386637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 49401 - 49282
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagattt 175  Q
    ||||||||||||| |||||||||||||||| |||||| | ||||| |||||||| |||||||  ||||| |  ||||| || |  |||  ||||||||||    
T  49401 accaaatagaaagaaatcaagacttttgttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaaaccaataaatgccactagattt 49302  T
Q  176 ctgtgttgaagcttggctat 195  Q
    || |||||||||||||||||    
T  49301 ctatgttgaagcttggctat 49282  T

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Target: scaffold0007 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 6947 - 6828
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagattt 175  Q
    ||||||||||||| |||||||||||||||| |||||| | ||||| |||||||| |||||||  ||||| |  ||||| || |  |||  ||||||||||    
T  6947 accaaatagaaagaaatcaagacttttgttgggcacaaattcataaataagtattttctcttgttcttcaaggcaaaaaccaataaatgccactagattt 6848  T
Q  176 ctgtgttgaagcttggctat 195  Q
    || |||||||||||||||||    
T  6847 ctatgttgaagcttggctat 6828  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 10401925 - 10402041
Alignment:
Q  76 accaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagattt 175  Q
    |||||||| ||||| ||||||||| |||||||||||||| ||||| |||||||| ||||| || ||||| |  ||||| || |  ||| | |||||||||    
T  10401925 accaaataaaaagtgatcaagactcttgttcggcacatattcatatataagtattttctcctcttcttcaaggcaaaagccgatgaatgtgactagattt 10402024  T
Q  176 ctgtgttgaagcttggc 192  Q
    || ||||||||||||||    
T  10402025 ctatgttgaagcttggc 10402041  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 470366 - 470486
Alignment:
Q  75 taccaaatagaaagtaatcaagacttttgttcggcacatactcatagataagtatcttctcttcatcttccaaacaaaatcctagtaatctcactagatt 174  Q
    |||||||||| || ||||||||||| || || |||||||| ||||| ||||| || || |||   |||||||| || |||||||||||  |||| | |||    
T  470366 taccaaataggaaataatcaagactcttattaggcacatattcatatataagcattttttctcgttcttccaagcagaatcctagtaaagtcaccaaatt 470465  T
Q  175 tctgtgttgaagcttggctat 195  Q
    ||| |||||||||||||||||    
T  470466 tctatgttgaagcttggctat 470486  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 36067430 - 36067476
Alignment:
Q  149 caaaatcctagtaatctcactagatttctgtgttgaagcttggctat 195  Q
    ||||||||||  |||||||| ||||||||||||||||||||||||||    
T  36067430 caaaatcctaacaatctcacaagatttctgtgttgaagcttggctat 36067476  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 36370155 - 36370099
Alignment:
Q  164 ctcactagatttctgtgttgaagcttggctataacttgaacctcatttttaaactct 220  Q
    ||||||||||||||||||||||| ||| ||| || || ||| |||||||||||||||    
T  36370155 ctcactagatttctgtgttgaagtttgactaaaagtttaacttcatttttaaactct 36370099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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