View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3597_low_6 (Length: 473)
Name: NF3597_low_6
Description: NF3597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3597_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 2037450 - 2036987
Alignment:
| Q |
1 |
agaacacactgttaatccattgagcgaaatcaataacctagctaacttttgatttttctatatcaattcattcttcaatcatgattcatgatcttatggg |
100 |
Q |
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| T |
2037450 |
agaacacactgttaatccattgagcgaaatcaatgacctagctaacttttgatttttctatatcaattcattcttcaatcatgattcatgatcttatgtg |
2037351 |
T |
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| Q |
101 |
gtaaatggctatatcattcatagaaag-nnnnnnnnttaacagcacagt-nnnnnnntatgcattccttaatttgaatcataagttataatataataatc |
198 |
Q |
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| T |
2037350 |
gtaaatggctatatcattcatagaaagaaaaaaaaattaacagcacagtaaaaaaaatatgcattccttaatttgaatcataagttataatataataatc |
2037251 |
T |
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| Q |
199 |
ggtatacttcattgattgaaattcataatcatattcaattactactcataacgaaaataattaatcatgaaaaag--------------gagaaaagaga |
284 |
Q |
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| T |
2037250 |
ggtatacttcattgattgaaattcataatcatattcaat---tactcataacgaaaataattaatcatgaaaaaggagaaaggagaaaagagaaaagaga |
2037154 |
T |
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| Q |
285 |
gtgagggactcactaccaccggaactacgactttgccgaggcatgttgttaatattctgtgttgtgannnnnnnattnnnnnnncaatagaattgaaaac |
384 |
Q |
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| T |
2037153 |
gtgagggactcactaccaccggaactacgactttgccgaggcatgttgttaatattctgtgttgtgatttttttattaaaaaaacaatagaattgaaaac |
2037054 |
T |
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| Q |
385 |
accttcaacaaaataatacttcaacaaactttcattttcttgtcctataaactagagctgagaactg |
451 |
Q |
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| T |
2037053 |
accttcaacaaaataatacttcaacaaattttcattttcttgtcctataaactagagctgagaactg |
2036987 |
T |
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