View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3597_low_7 (Length: 449)
Name: NF3597_low_7
Description: NF3597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3597_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 34139469 - 34139899
Alignment:
| Q |
1 |
ctcatagtgttttaacttcagagnnnnnnngtgaacttaattgacaaacatgaagactaattaaattaattacaaagcttacttgcagtatatacaatga |
100 |
Q |
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| T |
34139469 |
ctcatagtgttttaacttcagagaaaaaaagtgaacttaattgacaaacatgaagactaattaaattaattacaaagcttacttgcagtatatacaatga |
34139568 |
T |
|
| Q |
101 |
agggggcaaagttactgagaagaaagaactgtgacaacacaataccttccagcagatacatatcggtcggcataatcagttggaaatggaagatcttctg |
200 |
Q |
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| T |
34139569 |
agggggcaaagttactgagaagaaagaactgtgacaacacaataccttccagcagaaacatatcggtcagcataatcagttggaaatggaagatcttctg |
34139668 |
T |
|
| Q |
201 |
catcgccttcaattatcttacattctttcaatgcttccttcttcttagccctagcaagctgatgaggagactgatcaagaattgtaacatttttagcatc |
300 |
Q |
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| T |
34139669 |
catcgccttcaattatcttacattctttcaatgcttccttcttcttagccctagcaagctgatgaggagactgatcaagaattgtaacatttttagcatc |
34139768 |
T |
|
| Q |
301 |
aacatgcttcactataccaagagtagtgaatccagttcctcctccaacatccacaactcgcattctccggtcatacaaatcagcaggctcaagtgcatca |
400 |
Q |
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| T |
34139769 |
aacatgcttcactataccaagagtagtgaatccagttcctcctccaacatccacaactcgcattctccggtcatacaaatcagcaggctcaagtgcatca |
34139868 |
T |
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| Q |
401 |
tctctcatgtcttcagtccaatgacctggat |
431 |
Q |
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| T |
34139869 |
tctctcatgtcttcagtccaatgacctggat |
34139899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 426
Target Start/End: Complemental strand, 31517540 - 31517256
Alignment:
| Q |
142 |
ataccttccagcagatacatatcggtcggcataatcagttggaaatggaagatcttctgcatcgccttcaattatcttacattctttcaatgcttccttc |
241 |
Q |
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|||||||||||| || ||||||| || |||||||||||| |||| || | |||||| ||||| ||||||| || ||||| || || | | ||||| |
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| T |
31517540 |
ataccttccagcggacacatatctatcagcataatcagttcgaaagggtaaatcttcagcatccccttcaacaattttacaatccttaagcggctccttt |
31517441 |
T |
|
| Q |
242 |
ttcttagccctagcaagctgatgaggagactgatcaagaattgtaacatttttagcatcaacatgcttcactataccaagagtagtgaatccagttcctc |
341 |
Q |
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| |||||| |||||||||||||||| |||||||||||||| || ||||| |||||||| |||||||| || ||||| | |||||||| ||||| || | |
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| T |
31517440 |
tccttagctttagcaagctgatgaggtgactgatcaagaatagtcacattcttagcatcgacatgcttaacaatacccaatgtagtgaaaccagtaccac |
31517341 |
T |
|
| Q |
342 |
ctccaacatccacaactcgcattctccggtcatacaaatcagcaggctcaagtgcatcatctctcatgtcttcagtccaatgacc |
426 |
Q |
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| |||||||| ||||| ||| ||| ||| | ||||| || ||||| || ||||||||||| ||||||||||||||||| |
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| T |
31517340 |
caccaacatcaacaacaatcatattcctatcagtaagttcagctggttcaagagcttcatctctcatatcttcagtccaatgacc |
31517256 |
T |
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