View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3597_low_9 (Length: 414)
Name: NF3597_low_9
Description: NF3597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3597_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 53 - 398
Target Start/End: Original strand, 45676998 - 45677342
Alignment:
| Q |
53 |
gctaattgttttggtggaaaaggtttatcgttgaattttataatttatgttccaattctgatgcgagtaaaagaaaattacattaactatggtattggta |
152 |
Q |
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| T |
45676998 |
gctaattgttttggtggaaaaggtttatcgttgaattttataatttatgttccaattctgatgcgagtaaaagaaaattacatgaactatggtattggta |
45677097 |
T |
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| Q |
153 |
caaattggatttgagccatggtatggtgttaagctctcaagtctcaaccatttatactatttgcacattgctgaaaatttgctttaatgtcttacctatc |
252 |
Q |
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| T |
45677098 |
caaattggatttgagccatggtatggtgttaagctttcaagtctcaaccatttatactatttgcacattgctgaaaatttgttttaatgtcttacctatc |
45677197 |
T |
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| Q |
253 |
agtataacaatatttcaggtaaagaatattgtaaaacaacaaattaagcttctgatgaaaattctatgttgaaacagttagaagaaaccgataacttaca |
352 |
Q |
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| T |
45677198 |
agtataacaatatttcaggtaaagaatattgtaaaacaac-aattaagcttctgatgaaaattctatgttgaaacagttagaagaaaccgataacttaca |
45677296 |
T |
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| Q |
353 |
agttccaggtagaatattggctttggaagctggtggatctaatttc |
398 |
Q |
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| T |
45677297 |
agttccaggtagaatattggctttggaagctggtggatctaatttc |
45677342 |
T |
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