View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3598_high_11 (Length: 355)
Name: NF3598_high_11
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 340
Target Start/End: Original strand, 26276173 - 26276499
Alignment:
| Q |
14 |
agatgcgcaaggtgttataggcgcaattttgctagtaagttttccatcaacggaggccctccaattcagcctatcatgggaatcatcaatagagagggta |
113 |
Q |
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| T |
26276173 |
agatgcgcaaggtgttataggcgcaattttgctagtaagttttccatcaacagaggccctccaattcagcctatcatgggaatcatcaatagagagggta |
26276272 |
T |
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| Q |
114 |
accgtgagaatttgctttgctaactctttagacttttgtatcagatacatggggatattccaattaccatccagaatgtaatctgctaccttcatgttaa |
213 |
Q |
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| T |
26276273 |
accgtgagaatttgctttgctaactctttagacttttgtatcagatacatggggatattccaattaccatccagaatgtaatctgctaccttcatgttaa |
26276372 |
T |
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| Q |
214 |
gggcagggtgcatgtgcagagggatattaagagattccacaatagattgttctaaccatttatctgtccagaagttgacagtgttcccattacctattga |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26276373 |
gggcagggtgcatgtgcagagggatattaagagattccacaatagattgttctaaccatttgtctgtccagaagttgacagtgttcccattacctattga |
26276472 |
T |
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| Q |
314 |
ccatgaggattgctcagcaatcattct |
340 |
Q |
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||||||||||||||||||| ||||||| |
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| T |
26276473 |
ccatgaggattgctcagcattcattct |
26276499 |
T |
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