View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3598_high_14 (Length: 333)
Name: NF3598_high_14
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 7106892 - 7107209
Alignment:
| Q |
1 |
aaaggtcttgattgcagcctagtaaaatattcaaacaatagttctaagtctaacactgctagtagtgttcttgtggctgctcctcactctatgatgttga |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7106892 |
aaaggtcttgattgcagcctagtaaaatattttaacaatagttctaagtctaacactactagtagtgttcttgtggctgctcctcactctatgatgttga |
7106991 |
T |
|
| Q |
101 |
tttcaattgttggtttctttggatttatttttcatttgttttgaaggctgaaaatgtgaagnnnnnnnccatctagtgtactaattgaaaaattatgttt |
200 |
Q |
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| T |
7106992 |
tttcaattgttggtttctttggatttatttttcatttgttttgaaggctgaaaatgtgaagaaaaaaaccatctagtgtattaattgaaaaattatgttt |
7107091 |
T |
|
| Q |
201 |
taggacaatctttgtaagaatgtgagtgagatgcacctttcatgtgtgatggtgaagaattttatattcagaacaagaaagaaagtacattaaatattgg |
300 |
Q |
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| T |
7107092 |
taggacaatctttgtaagaatgtgagtgagatgcacctttcatgtgtgatggtgaagaattttatattcagaacaagaaagaaagtacattaaatattgg |
7107191 |
T |
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| Q |
301 |
ggttatatatgttgttta |
318 |
Q |
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|||||||||||||||||| |
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| T |
7107192 |
ggttatatatgttgttta |
7107209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 8787738 - 8787421
Alignment:
| Q |
1 |
aaaggtcttgattgcagcctagtaaaatattcaaacaatagttctaagtctaacactgctagtagtgttcttgtggctgctcctcactctatgatgttga |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8787738 |
aaaggtcttgattgcagcctagtaaaatattttaacaatagttctaagtctaacactactagtagtgttcttgtggctgctcctcactctatgatgttga |
8787639 |
T |
|
| Q |
101 |
tttcaattgttggtttctttggatttatttttcatttgttttgaaggctgaaaatgtgaagnnnnnnnccatctagtgtactaattgaaaaattatgttt |
200 |
Q |
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| T |
8787638 |
tttcaattgttggtttctttggatttatttttcatttgttttgaaggctgaaaatgtgaagaaaaaaaccatctagtgtattaattgaaaaattatgttt |
8787539 |
T |
|
| Q |
201 |
taggacaatctttgtaagaatgtgagtgagatgcacctttcatgtgtgatggtgaagaattttatattcagaacaagaaagaaagtacattaaatattgg |
300 |
Q |
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| T |
8787538 |
taggacaatctttgtaagaatgtgagtgagatgcacctttcatgtgtgatggtgaagaattttatattcagaacaagaaagaaagtacattaaatattgg |
8787439 |
T |
|
| Q |
301 |
ggttatatatgttgttta |
318 |
Q |
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|||||||||||||||||| |
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| T |
8787438 |
ggttatatatgttgttta |
8787421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 50 - 157
Target Start/End: Original strand, 7095839 - 7095946
Alignment:
| Q |
50 |
ctaacactgctagtagtgttcttgtggctgctcctcactctatgatgttgatttcaattgttggtttctttggatttatttttcatttgttttgaaggct |
149 |
Q |
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| T |
7095839 |
ctaacccttctagtagtgttcatgtggctgctcctcattatatgttgatagtttcaattgttggtttctttggatttattttccatttgttctaaagggt |
7095938 |
T |
|
| Q |
150 |
gaaaatgt |
157 |
Q |
| |
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||||||| |
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| T |
7095939 |
aaaaatgt |
7095946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 157
Target Start/End: Complemental strand, 8800402 - 8800295
Alignment:
| Q |
50 |
ctaacactgctagtagtgttcttgtggctgctcctcactctatgatgttgatttcaattgttggtttctttggatttatttttcatttgttttgaaggct |
149 |
Q |
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||||| || |||||||||||| ||||||||||||||| | |||| || | ||||||||||||||||||||||||| ||||| |||||||| | |||| | |
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| T |
8800402 |
ctaacccttctagtagtgttcatgtggctgctcctcattatatgttgatagtttcaattgttggtttctttggattaattttccatttgttctaaagggt |
8800303 |
T |
|
| Q |
150 |
gaaaatgt |
157 |
Q |
| |
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||||||| |
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| T |
8800302 |
aaaaatgt |
8800295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 7096058 - 7096115
Alignment:
| Q |
227 |
tgagatgcacctttcatgtgtgatggtgaagaattttatattcagaacaagaaagaaa |
284 |
Q |
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|||| |||||||||||||||| |||||| | |||||||| ||||||||||| |||||| |
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| T |
7096058 |
tgaggtgcacctttcatgtgtaatggtggataattttattttcagaacaagcaagaaa |
7096115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 8800266 - 8800209
Alignment:
| Q |
227 |
tgagatgcacctttcatgtgtgatggtgaagaattttatattcagaacaagaaagaaa |
284 |
Q |
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|||| |||||||||||||||| |||||| | |||||||| ||||||||||| |||||| |
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| T |
8800266 |
tgaggtgcacctttcatgtgtaatggtggataattttattttcagaacaagcaagaaa |
8800209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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