View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3598_high_2 (Length: 576)
Name: NF3598_high_2
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 18 - 563
Target Start/End: Complemental strand, 44851009 - 44850474
Alignment:
| Q |
18 |
aaccacatgtgttggtgtgggaaactgacaccgacacgacgctttcaatatgaagagtagggtgctactgtagcatattcaaatctagatagaattcaac |
117 |
Q |
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| T |
44851009 |
aaccacatgtgttggtgtgggaaactgacaccgacacgacgctttcaatatgaagagtagggtgctactgtagcatattcaaatctagatagaattcaac |
44850910 |
T |
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| Q |
118 |
ttctgtagccttagagttgagaacttccacattggcgaagaatccaaat-agttcttaacttacttatcatactcaattaaacccactattttttatcaa |
216 |
Q |
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| T |
44850909 |
ttctgtagccttagagttgagaactt--------------aatccaaattagttcttaacttacttatcatactcaattaaacccactattttttatcaa |
44850824 |
T |
|
| Q |
217 |
aaccatttcttgatagaccgtgttataaaagaactattctttcatgtggttcttatacaaaatgtcatataaacttgagttggaaatgttctaattataa |
316 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44850823 |
aaccatttattgatagaccgtgttataaaagaactattctttcatgtggttcttatataaaatgtcatataaacttgagttggaaatgttctaattataa |
44850724 |
T |
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| Q |
317 |
gaatgctgtcttacatgcaagatcttagaacatctctaaggccaatttctatgagtaattgtccttatatcaagacatggcttcaatttagcatatatat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44850723 |
gaatgctgtcttacatgcaagatcttagaacatctctaaggccaatttctatgagtaattgtccttatatcaagacatggcttcaatttagcatatatat |
44850624 |
T |
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| Q |
417 |
taactgtgtatttgaaacagtttgttttgtatttttctgacccagcttgtattagtattgtgtataagctgaatgaatcagtttgttttgtatt---tga |
513 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44850623 |
taactgtgtatttgaaacagtttgtttcgtatttttctgacccagcttgtattagtattgtgtataagctgaatgaatcagtttgttttgtatttgatga |
44850524 |
T |
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| Q |
514 |
gtcacattaagaaacttctttggattcccttgccacttggaccacaggtt |
563 |
Q |
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| T |
44850523 |
gtcacattaagaaacttctttggattcccttgccacttggaccacaggtt |
44850474 |
T |
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