View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3598_high_21 (Length: 249)
Name: NF3598_high_21
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 3357556 - 3357780
Alignment:
| Q |
13 |
aatattataactaaccaaccaacattcgccaaacaaccaccctctctaatcctattcaaatgttgccttaacataaccacttccttccacaaaacacaat |
112 |
Q |
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| T |
3357556 |
aatattataactaatcaaccaacattcgccaaacaaccaccctctctaatcctattcaaatgttgccttaacataacctcttccttccacaaaacacaat |
3357655 |
T |
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| Q |
113 |
ctatcatctttctctccatacccagcacaaagcaccttataccacaaacttctcatttcctccaaaaccctccaacaccatttcaca---agtaaagcta |
209 |
Q |
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| T |
3357656 |
ctcccatctttctctccatacccagcacaaagcaccttataccataaacttctcatttcctccaaaaccctccaacaccatttcacaagtagtaaagcta |
3357755 |
T |
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| Q |
210 |
aattaaaatccttcgatctcctaat |
234 |
Q |
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| T |
3357756 |
aattaaaatccttcgatctcctaat |
3357780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 16283852 - 16283792
Alignment:
| Q |
173 |
tccaaaaccctccaacaccatttcacaagtaaagctaaattaaaatccttcgatctcctaa |
233 |
Q |
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| T |
16283852 |
tccaaaaccctccaacaccatttgccaattaacgctaaattaaactccttcaacctcctaa |
16283792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 17266089 - 17266139
Alignment:
| Q |
173 |
tccaaaaccctccaacaccatttcacaagtaaagctaaattaaaatccttc |
223 |
Q |
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| T |
17266089 |
tccaaaaccctccaacaccatttgccaattaacgctaaattaaactccttc |
17266139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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