View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3598_high_25 (Length: 238)
Name: NF3598_high_25
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4140171 - 4139945
Alignment:
| Q |
1 |
atgatatatttagaagaatcgaaacttattttaatataaaattttgatccatgtaattatatcatctttcatttttagtctctctatacaatgtcacatt |
100 |
Q |
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| T |
4140171 |
atgatatatttataagaatcaaaacttattttaatataaaattttgatccatgtaattatatcatctttcatttttagtctctctatacaatgtcacatt |
4140072 |
T |
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| Q |
101 |
taacttattttaacatcgaacacctaatttgctgatggaaaacattttgggaataaatgtttgtagaaattttttaaaaggactaaaaataaaagaaacg |
200 |
Q |
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| T |
4140071 |
taacttattttaacatcgaacacctaattcgctgatggaaaacattttgggaataagtgtttgtagaaattttttagaaggactaaaaacaaaagaaatg |
4139972 |
T |
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| Q |
201 |
atactccttttatcctaaaataattga |
227 |
Q |
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| T |
4139971 |
atactccttttatccaaaaataattga |
4139945 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 29559810 - 29559899
Alignment:
| Q |
58 |
tatatcatctttcatttttagtctctctatacaatgtcacatttaacttattttaacatcgaacacctaatttgctgatggaaaacattt |
147 |
Q |
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| T |
29559810 |
tataccatctttcatttttagttcctctgttcagtatcacgtttaacttactttaacaacaaggaccaaatttgctgatggaaaacattt |
29559899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 29857885 - 29857940
Alignment:
| Q |
58 |
tatatcatctttcatttttagtctctctatacaatgtcacatttaacttattttaac |
114 |
Q |
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| T |
29857885 |
tatatcatatttcatttttagtctctatatatagtgtcac-tttaacttattttaac |
29857940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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