View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3598_high_31 (Length: 227)
Name: NF3598_high_31
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 4140868 - 4140657
Alignment:
| Q |
7 |
cacaaagtcaccagaaacaatcttttccaacaacacctcaaaagaagctgcaaggagtgcttctacaacaataagttggtcagtttgcaagaatagaaac |
106 |
Q |
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| T |
4140868 |
cacaaagtcaccagaaacaatcttttccaacaacacctcaaaagaagctgcaaggagtgcttctacaacaataagttggtcagtttgcaagaatagaaat |
4140769 |
T |
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| Q |
107 |
acatgtttaaaaatggggaatgcaacggatatacatgtttaaacaaataatagataacttcactattaaagtcacggaggtaccaactaccataccttaa |
206 |
Q |
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| T |
4140768 |
acatgtttaaaaatggggaatgcaacggatatacatgtttaaacaaataatagataacttcactattaaagtcacggaggtaccaactaccataccttaa |
4140669 |
T |
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| Q |
207 |
ttattgttgttt |
218 |
Q |
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| T |
4140668 |
ttattgttgttt |
4140657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 4129160 - 4129095
Alignment:
| Q |
14 |
tcaccagaaacaatcttttccaacaacacctcaaaagaagctgcaaggagtgcttctacaacaata |
79 |
Q |
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| T |
4129160 |
tcaccagaaacaatcttttccatcaacacttccaaagaagctgcaagaagtgcttctcccacaata |
4129095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 13932579 - 13932522
Alignment:
| Q |
22 |
aacaatcttttccaacaacacctcaaaagaagctgcaaggagtgcttctacaacaata |
79 |
Q |
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| T |
13932579 |
aacaatttttttcaacaacagctccaaagaagctgaaagaagtgcttctaccacaata |
13932522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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