View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3598_high_9 (Length: 383)
Name: NF3598_high_9
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_high_9 |
 | |
|
| [»] scaffold0468 (2 HSPs) |
| | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 13808603 - 13808969
Alignment:
| Q |
10 |
aagaatattctactgctcaatctgaaggactgtacatgtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13808603 |
aagaatattctactgctcaatctgaaggactgtacaagtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctg |
13808702 |
T |
|
| Q |
110 |
gttgttcaaagattgacaagttggaagaagacatagtccagatggaatccttgacaacactgatcgcaaaagatacaggtgtaaaagagatgccatactc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13808703 |
gttgttcaaagattgacaagttggaagaagacatagtccagatggaatccttgacaacactgatcgcaaaagatacaggtgtaaaagagatgccatactc |
13808802 |
T |
|
| Q |
210 |
aatactaggattgaaaggcatcgcatatatatccctatgtggatgtgaaggattgtcatttgaagttcttccttctgtcatttggtcttgcgtgccacca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13808803 |
aatactaggattgaaaggcatcgcatatatatccctatgtggatgtgaaggattgtcatttgaagttcttccttctgtcatttggtcttgcgtgccacca |
13808902 |
T |
|
| Q |
310 |
accatgaattcctcacctcgtatttccccatttgataaccaatacgatgtagattttactgaatcgg |
376 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13808903 |
accatgaattcttcacctcgtatttccccatttgataaccaatacgatgtagattttactgaatcgg |
13808969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 70 - 343
Target Start/End: Complemental strand, 3262869 - 3262597
Alignment:
| Q |
70 |
atatatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaagaagacatagtccagatggaatccttgacaacac |
169 |
Q |
| |
|
||||| || |||||||| ||||||||||| || |||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3262869 |
atataccaattgaaatctttgaaaactctcatactttctggttgctcaaagattgacaaattggaagaagacatagtgcagatggaatccttgacaacac |
3262770 |
T |
|
| Q |
170 |
tgatcgcaaaagatacaggtgtaaaagagatgccatactcaatactaggattgaaaggcatcgcatatatatccctatgtggatgtgaaggattgtcatt |
269 |
Q |
| |
|
|||| ||||| ||||||||||| |||||| |||| || |||||| || ||| ||| |||| | |||||||||||||||||||| || |||||| ||| |
|
|
| T |
3262769 |
tgattgcaaaggatacaggtgtgaaagaggtgccctattcaatagtaagatcaaaaagcattggatatatatccctatgtggatatg-aggattttcacg |
3262671 |
T |
|
| Q |
270 |
tgaagttcttccttctgtcatttggtcttgcgtgccaccaaccatgaattcctcacctcgtatttccccatttg |
343 |
Q |
| |
|
||| ||| |||| ||| ||||||||||||| || |||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
3262670 |
tgatgtttttccctctatcatttggtcttggatgtcaccaaccatgaattctctaccccgtatttccccatttg |
3262597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 40 - 263
Target Start/End: Complemental strand, 3267471 - 3267248
Alignment:
| Q |
40 |
tgtacatgtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaagaag |
139 |
Q |
| |
|
|||||| ||||| || ||||||| || |||| |||| ||||| || |||| |||||| ||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3267471 |
tgtacaagtcttagcaatctcccaaagaagataaatcaattgaagtctttgacaactctcatcatttctggttgttcaaagattgacaagttagaagaag |
3267372 |
T |
|
| Q |
140 |
acatagtccagatggaatccttgacaacactgatcgcaaaagatacaggtgtaaaagagatgccatactcaatactaggattgaaaggcatcgcatatat |
239 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| || ||||||||||||||| |||||| |||| || ||| | || |||||||| |||||| |||||| |
|
|
| T |
3267371 |
gcatagtgcagatggaatccttaacaacactggtcataaaagatacaggtgtgaaagaggtgccgtattcagtggtaagattgaaaagcatcggatatat |
3267272 |
T |
|
| Q |
240 |
atccctatgtggatgtgaaggatt |
263 |
Q |
| |
|
||| |||||||||| ||||||||| |
|
|
| T |
3267271 |
atctctatgtggatatgaaggatt |
3267248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 80 - 320
Target Start/End: Complemental strand, 3286748 - 3286508
Alignment:
| Q |
80 |
tgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaagaagacatagtccagatggaatccttgacaacactgatcgcaaa |
179 |
Q |
| |
|
||||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
3286748 |
tgaaatctttgaacactctcatcctttctggttgttcaaagattgacaagttggaagaagacatagtgcagatggaatccttgacaacactgattgcaaa |
3286649 |
T |
|
| Q |
180 |
agatacaggtgtaaaagagatgccatactcaatactaggattgaaaggcatcgcatatatatccctatgtggatgtgaaggattgtcatttgaagttctt |
279 |
Q |
| |
|
|||||| ||| ||||| |||| | ||||| || ||| ||| ||||| |||||||||||||||||||| ||||||||| ||| ||| ||| || |
|
|
| T |
3286648 |
taatacagctgttaaagaagtgcccttttcaattgtaagatcaaaaagcatcagatatatatccctatgtggatatgaaggattatcacatgatgttttt |
3286549 |
T |
|
| Q |
280 |
ccttctgtcatttggtcttgcgtgccaccaaccatgaattc |
320 |
Q |
| |
|
| ||| ||||| ||||||| || ||||||| ||||||| |
|
|
| T |
3286548 |
caatctctcattaggtcttggatgtcaccaacactgaattc |
3286508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 32 - 344
Target Start/End: Complemental strand, 3325281 - 3324969
Alignment:
| Q |
32 |
tgaaggactgtacatgtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagtt |
131 |
Q |
| |
|
||||||||||| || ||||| | |||||||| || ||| ||||| |||||||| ||| ||||||| || || |||||||||||||||||||||||||| |
|
|
| T |
3325281 |
tgaaggactgtgcaagtcttagaaatctcccaggggagatctatcaattgaaatctttggaaactcttatattatctggttgttcaaagattgacaagtt |
3325182 |
T |
|
| Q |
132 |
ggaagaagacatagtccagatggaatccttgacaacactgatcgcaaaagatacaggtgtaaaagagatgccatactcaatactaggattgaaaggcatc |
231 |
Q |
| |
|
|||||||| | | |||||||||||||||||||| ||||| || ||||||||| ||||||| | | || || ||||||||| |||| ||| |||| |
|
|
| T |
3325181 |
ggaagaaggtttcgggcagatggaatccttgacaacgctgattgctaaagatacatctgtaaaacaagttccttattcaatactaagattaaaaagcatt |
3325082 |
T |
|
| Q |
232 |
gcatatatatccctatgtggatgtgaaggattgtcatttgaagttcttccttctgtcatttggtcttgcgtgccaccaaccatgaattcctcacctcgta |
331 |
Q |
| |
|
| |||||||||||| ||||||| ||||||| | ||| || ||| |||||||| ||||||||||||| || |||||| |||||||||| ||| ||| |
|
|
| T |
3325081 |
ggatatatatccctctgtggatatgaaggactatcacacgatgtttttccttctatcatttggtcttggatgtcaccaagcatgaattccctaccctgta |
3324982 |
T |
|
| Q |
332 |
tttccccatttga |
344 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
3324981 |
tatccccatttga |
3324969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 77 - 321
Target Start/End: Complemental strand, 7164888 - 7164644
Alignment:
| Q |
77 |
agttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaagaagacatagtccagatggaatccttgacaacactgatcgc |
176 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||||||||||||||| | |||||| |||||||||||||||||||||| |
|
|
| T |
7164888 |
agttgaaatcattgaaaactctcatcctttctggttgttcaaagattgcctagttggaagaagacataatgcagatgaaatccttgacaacactgatcgc |
7164789 |
T |
|
| Q |
177 |
aaaagatacaggtgtaaaagagatgccatactcaatactaggattgaaaggcatcgcatatatatccctatgtggatgtgaaggattgtcatttgaagtt |
276 |
Q |
| |
|
||| ||||||| ||||||||| |||| | | | || || ||| ||| |||| | ||| ||||||||||| ||| |||||| || || | ||| ||| |
|
|
| T |
7164788 |
aaatgatacagctgtaaaagaagtgccctgtttattagtaagatcaaaaagcattggatacttatccctatgtagatatgaagggttatcctgtgatgtt |
7164689 |
T |
|
| Q |
277 |
cttccttctgtcatttggtcttgcgtgccaccaaccatgaattcc |
321 |
Q |
| |
|
|||||||| | ||||||||||| || |||||||| |||||||| |
|
|
| T |
7164688 |
tttccttctcttatttggtcttggatgtcaccaaccttgaattcc |
7164644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 3375003 - 3375139
Alignment:
| Q |
37 |
gactgtacatgtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaag |
136 |
Q |
| |
|
||||||||| ||||| ||| ||||||| |||||| ||||| |||||| ||||||||||| || |||||||||||||||||||| |||||||||||| |
|
|
| T |
3375003 |
gactgtacaagtcttaccaatctcccaagggtgatctatcatttgaaacttttgaaaactcttatactttctggttgttcaaagattaacaagttggaag |
3375102 |
T |
|
| Q |
137 |
aagacatagtccagatggaatccttgacaacactgat |
173 |
Q |
| |
|
|||||||| | ||||||||||||||||||||| |||| |
|
|
| T |
3375103 |
aagacataatgcagatggaatccttgacaacaatgat |
3375139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 3398797 - 3398666
Alignment:
| Q |
36 |
ggactgtacatgtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaa |
135 |
Q |
| |
|
|||||||||| ||||||||| ||||||| | ||| ||||| ||||||||| |||||||||| || ||||||||||||||||||||||||| |||||| |
|
|
| T |
3398797 |
ggactgtacaagtcttgccaatctcccaagagagatctatcaattgaaatcagtgaaaactctcattatttctggttgttcaaagattgacaaattggaa |
3398698 |
T |
|
| Q |
136 |
gaagacatagtccagatggaatccttgacaac |
167 |
Q |
| |
|
||||| ||| | || ||||||||||||||||| |
|
|
| T |
3398697 |
gaagatatattgcaaatggaatccttgacaac |
3398666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 34 - 321
Target Start/End: Original strand, 31175769 - 31176056
Alignment:
| Q |
34 |
aaggactgtacatgtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttgg |
133 |
Q |
| |
|
|||||||||||| |||||| || ||||||| | | | | ||| | ||| |||| |||||| ||| || ||||||||||||||| ||||||||| |||| |
|
|
| T |
31175769 |
aaggactgtacaagtcttggcaatctcccaaaagaggtctataaagtgagatcagtgaaaagtctcattctttctggttgttcaatgattgacaaattgg |
31175868 |
T |
|
| Q |
134 |
aagaagacatagtccagatggaatccttgacaacactgatcgcaaaagatacaggtgtaaaagagatgccatactcaatactaggattgaaaggcatcgc |
233 |
Q |
| |
|
||||||| ||| | || ||||||||||||||||| | || ||| | |||| ||| | ||| | |||| || |||||| | ||| ||| |||| || |
|
|
| T |
31175869 |
aagaagatatattgcaaatggaatccttgacaactttaattgcagcaaatactggtatcaaacaagtgccctattcaatagcaagatcaaaaagcattgc |
31175968 |
T |
|
| Q |
234 |
atatatatccctatgtggatgtgaaggattgtcatttgaagttcttccttctgtcatttggtcttgcgtgccaccaaccatgaattcc |
321 |
Q |
| |
|
||||||||| |||||||||| ||||||||| |||| ||| ||| |||||||| ||||||||||||| || |||||||||| |||||| |
|
|
| T |
31175969 |
atatatatctctatgtggatatgaaggattatcatgtgacgtttttccttctctcatttggtcttggatgtcaccaaccataaattcc |
31176056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 3391839 - 3391682
Alignment:
| Q |
10 |
aagaatattctactgctcaatctgaaggactgtacatgtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctg |
109 |
Q |
| |
|
|||||| |||| ||| | ||| ||||||||||||| ||||| || ||||||| | ||| ||||| |||| | || || ||||||| ||| |||||| |
|
|
| T |
3391839 |
aagaatcttcttctgttaaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtggaaactctcatcctttctg |
3391740 |
T |
|
| Q |
110 |
gttgttcaaagattgacaagttggaagaagacatagtccagatggaatccttgacaac |
167 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
3391739 |
gttgttcaaagattgacaaattggaagaagatatagtgcaaatggaatccttgacaac |
3391682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 3364149 - 3364224
Alignment:
| Q |
92 |
aaactctaatcttttctggttgttcaaagattgacaagttggaagaagacatagtccagatggaatccttgacaac |
167 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
3364149 |
aaactctcatcctttctggttgttcaaagattgacaaattggaagaagatatagtgcaaatggaatccttgacaac |
3364224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 3407557 - 3407469
Alignment:
| Q |
79 |
ttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaagaagacatagtccagatggaatccttgacaac |
167 |
Q |
| |
|
|||| |||| |||||||||| ||| ||||||||||||||||||||| ||| ||||||||||| ||||| || ||| ||||||||||||| |
|
|
| T |
3407557 |
ttgagatcagtgaaaactctcatcctttctggttgttcaaagattgtcaaattggaagaagatatagtgcaaatgaaatccttgacaac |
3407469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 13787411 - 13787499
Alignment:
| Q |
77 |
agttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaagaagacatagtccagatggaatccttgaca |
165 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||| |||||| | ||||||| | ||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
13787411 |
agttgaaatcattgaagactctcatccttttaggttgtacgaagattggctcgttggaaaaagacatagtgcagatggaatccttgaca |
13787499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 322
Target Start/End: Original strand, 3314980 - 3315068
Alignment:
| Q |
234 |
atatatatccctatgtggatgtgaaggattgtcatttgaagttcttccttctgtcatttggtcttgcgtgccaccaaccatgaattcct |
322 |
Q |
| |
|
||||||||||||||||| || |||||| || ||| ||| ||| |||||||| ||||||||||||| || |||||| ||||||||||| |
|
|
| T |
3314980 |
atatatatccctatgtgaatatgaaggtttatcacgtgatgtttttccttctatcatttggtcttggatgtcaccaaacatgaattcct |
3315068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 3314850 - 3314913
Alignment:
| Q |
104 |
tttctggttgttcaaagattgacaagttggaagaagacatagtccagatggaatccttgacaac |
167 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| ||||| || ||| |||| |||||||| |
|
|
| T |
3314850 |
tttctggttgttcaaagattgaaaaattggaagaagatatagtgcaaatgaaatcattgacaac |
3314913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 313
Target Start/End: Complemental strand, 3398606 - 3398520
Alignment:
| Q |
227 |
gcatcgcatatatatccctatgtggatgtgaaggattgtcatttgaagttcttccttctgtcatttggtcttgcgtgccaccaacca |
313 |
Q |
| |
|
|||| ||||||||||| |||||||||| | ||||||| || | ||| ||| |||||||| |||||||||| || || ||||||||| |
|
|
| T |
3398606 |
gcattgcatatatatctctatgtggatataaaggattatcgtctgatgtttttccttctctcatttggtcatggatgtcaccaacca |
3398520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 322
Target Start/End: Complemental strand, 3407400 - 3407314
Alignment:
| Q |
236 |
atatatccctatgtggatgtgaaggattgtcatttgaagttcttccttctgtcatttggtcttgcgtgccaccaaccatgaattcct |
322 |
Q |
| |
|
||||||| |||||||||| | ||||||| ||| ||| ||| |||||||| ||||||||||||| || ||||||| ||||| |||| |
|
|
| T |
3407400 |
atatatctctatgtggatatcaaggattatcacgtgatgtttttccttctatcatttggtcttggatgtcaccaacaatgaactcct |
3407314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 32 - 320
Target Start/End: Complemental strand, 32411361 - 32411076
Alignment:
| Q |
32 |
tgaaggactgtacatgtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagtt |
131 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| || ||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||| || || |
|
|
| T |
32411361 |
tgaaggactgtacaagtcttaacagtctcccaaagaagatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaactt |
32411262 |
T |
|
| Q |
132 |
ggaagaagacatagtccagatggaatccttgacaacactgatcgcaaaagatacaggtgtaaaagagatgccatactcaatactaggattgaaaggcatc |
231 |
Q |
| |
|
||||||| ||||| || |||||||| |||||||||||||| |||||||||||||||||||||||| |||| | |||||| || ||| |||| ||||| |
|
|
| T |
32411261 |
ggaagaa---atagtgcaaatggaatcgttgacaacactgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaagatcgaaaagcatc |
32411165 |
T |
|
| Q |
232 |
gcatatatatccctatgtggatgtgaaggattgtcatttgaagttcttccttctgtcatttggtcttgcgtgccaccaaccatgaattc |
320 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| ||| |||||| |||| ||| |||||||||||| || ||||||| |||||||| |
|
|
| T |
32411164 |
gcatatatatctctatgtggatatgaaggattatcacatgaagtatttccctctctcatttggtcttagatgtcaccaacaatgaattc |
32411076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 167
Target Start/End: Complemental strand, 6906087 - 6905952
Alignment:
| Q |
32 |
tgaaggactgtacatgtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagtt |
131 |
Q |
| |
|
|||||||||||||| |||||| || ||| ||| || ||| |||||| ||| ||| |||||||||| || ||| ||||||||||||||||||||| || |
|
|
| T |
6906087 |
tgaaggactgtacaagtcttggcaatctaccaagggagatctatcagctgatatctgtgaaaactctcattctttttggttgttcaaagattgacaaatt |
6905988 |
T |
|
| Q |
132 |
ggaagaagacatagtccagatggaatccttgacaac |
167 |
Q |
| |
|
||| ||||| ||||| || ||| ||||||||||||| |
|
|
| T |
6905987 |
ggaggaagatatagtgcaaatgaaatccttgacaac |
6905952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 6905884 - 6905801
Alignment:
| Q |
235 |
tatatatccctatgtggatgtgaaggattgtcatttgaagttcttccttctgtcatttggtcttgcgtgccaccaaccatgaat |
318 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||| ||| || |||||||| ||||||||||||| || ||||||| |||||| |
|
|
| T |
6905884 |
tatatatccctatgcggatatgaaggattatcacgtgatatttttccttctctcatttggtcttggatgtcaccaacaatgaat |
6905801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 34 - 321
Target Start/End: Complemental strand, 12599331 - 12599044
Alignment:
| Q |
34 |
aaggactgtacatgtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttgg |
133 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||| || ||| ||||| |||||| | ||||||||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
12599331 |
aaggactgtacaagtcttaccaatctcccacgggagatctatcaattgaaaactttgaaaactcttatactttctggttgttcaaagattagcaagttgg |
12599232 |
T |
|
| Q |
134 |
aagaagacatagtccagatggaatccttgacaacactgatcgcaaaagatacaggtgtaaaagagatgccatactcaatactaggattgaaaggcatcgc |
233 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| || ||| ||||| | ||||||| | | | ||||||||| || ||||| |||| | |
|
|
| T |
12599231 |
aagaagacatagtacagatggaatccttgacaacactgattgccaaaaatacatctataaaagaagtttcccattcaatactaagactgaaaagcattgg |
12599132 |
T |
|
| Q |
234 |
atatatatccctatgtggatgtgaaggattgtcatttgaagttcttccttctgtcatttggtcttgcgtgccaccaaccatgaattcc |
321 |
Q |
| |
|
|||||||||| | ||||||| ||||||||| ||| ||| ||| |||||||| ||| ||||||||| || |||||||| | |||||| |
|
|
| T |
12599131 |
atatatatccttgtgtggatatgaaggattatcacgtgatgtttttccttctctcaattggtcttggatgtcaccaaccgtaaattcc |
12599044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 313
Target Start/End: Original strand, 20812201 - 20812478
Alignment:
| Q |
36 |
ggactgtacatgtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaa |
135 |
Q |
| |
|
|||||||| | ||||||||| ||||||| | ||| ||| | |||| ||| |||||||||| || |||||||||||||||||||||| ||||||||| |
|
|
| T |
20812201 |
ggactgtaaaagtcttgccaatctcccaagagagatctataaattgatatcggtgaaaactcttattctttctggttgttcaaagattgagaagttggaa |
20812300 |
T |
|
| Q |
136 |
gaagacatagtccagatggaatccttgacaacactgatcgcaaaagatacaggtgtaaaagagatgccatactcaatactaggattgaaaggcatcgcat |
235 |
Q |
| |
|
||||| ||| | || ||||||||||||||| | || || ||| | |||| ||| | ||| | |||| || |||||| | ||| ||| |||| |||| |
|
|
| T |
20812301 |
gaagatataatgcaaatggaatccttgacagctctaattgcagcaaatactggtatcaaacaagtgccctattcaatagcaagatcaaaaagcattgcat |
20812400 |
T |
|
| Q |
236 |
atatatccctatgtggatgtgaaggattgtcatttgaagttcttccttctgtcatttggtcttgcgtgccaccaacca |
313 |
Q |
| |
|
||||||| |||||||||| |||||||| ||| ||| ||| |||||||| ||||||||||||| || ||||||||| |
|
|
| T |
20812401 |
atatatcactatgtggatacgaaggattatcacgtgatgtttttccttctctcatttggtcttggatgtcaccaacca |
20812478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 313
Target Start/End: Original strand, 20838556 - 20838833
Alignment:
| Q |
36 |
ggactgtacatgtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaa |
135 |
Q |
| |
|
|||||||| | ||||||||| ||||||| | ||| ||||| |||| ||| |||||||||| || |||||||||||||||||||||| || |||||| |
|
|
| T |
20838556 |
ggactgtaaaagtcttgccaatctcccaagagagatctatcaattgatatcggtgaaaactcttattctttctggttgttcaaagattgagaaattggaa |
20838655 |
T |
|
| Q |
136 |
gaagacatagtccagatggaatccttgacaacactgatcgcaaaagatacaggtgtaaaagagatgccatactcaatactaggattgaaaggcatcgcat |
235 |
Q |
| |
|
||||| ||| | || ||||||||||||||| | || || ||| | |||| ||| | ||| | |||| || |||||| | ||| ||| |||| | || |
|
|
| T |
20838656 |
gaagatataatgcaaatggaatccttgacagctctaattgcagcaaatactggtatcaaacaagtgccctattcaatagcaagatcaaaaagcattggat |
20838755 |
T |
|
| Q |
236 |
atatatccctatgtggatgtgaaggattgtcatttgaagttcttccttctgtcatttggtcttgcgtgccaccaacca |
313 |
Q |
| |
|
||||||| |||||||||| ||||||||| ||| ||| ||| |||||||| ||||||||||||| || ||||||||| |
|
|
| T |
20838756 |
atatatcactatgtggatatgaaggattatcacatgatgtttttccttctctcatttggtcttggatgtcaccaacca |
20838833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 15802831 - 15802962
Alignment:
| Q |
32 |
tgaaggactgtacatgtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagtt |
131 |
Q |
| |
|
||||||||||||| ||||| || ||||||| | ||| ||||| |||| | || |||||||||| ||| ||||||||||||||||||||||||| || |
|
|
| T |
15802831 |
tgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtgaaaactctcatcctttctggttgttcaaagattgacaaatt |
15802930 |
T |
|
| Q |
132 |
ggaagaagacatagtccagatggaatccttga |
163 |
Q |
| |
|
|| ||||| ||| | || ||||||||||||| |
|
|
| T |
15802931 |
agacgaagatatattgcaaatggaatccttga |
15802962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 32 - 263
Target Start/End: Complemental strand, 14767228 - 14766997
Alignment:
| Q |
32 |
tgaaggactgtacatgtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagtt |
131 |
Q |
| |
|
|||||||||||||| |||||| | ||||||| | ||| ||||| |||||||| ||||||||||| ||| |||| || ||||||||||||||||| || |
|
|
| T |
14767228 |
tgaaggactgtacaagtcttgaaaatctcccaagagagatctatcaattgaaatctttgaaaactctcatcctttccggctgttcaaagattgacaaatt |
14767129 |
T |
|
| Q |
132 |
ggaagaagacatagtccagatggaatccttgacaacactgatcgcaaaagatacaggtgtaaaagagatgccatactcaatactaggattgaaaggcatc |
231 |
Q |
| |
|
||||||||| || || || ||||||||||||||| ||||||| |||| | ||||| | ||||||| | ||||| ||||||||| |||| ||| |||| |
|
|
| T |
14767128 |
ggaagaagatattgtgcaaatggaatccttgacatcactgattgcaacaaatacatctataaaagaagttccatattcaatactaagattaaaaagcatt |
14767029 |
T |
|
| Q |
232 |
gcatatatatccctatgtggatgtgaaggatt |
263 |
Q |
| |
|
| |||||||||||||||||| | ||||||||| |
|
|
| T |
14767028 |
ggatatatatccctatgtggttatgaaggatt |
14766997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 284
Target Start/End: Complemental strand, 8371899 - 8371688
Alignment:
| Q |
73 |
tatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaagaagacatagtccagatggaatccttgacaacactga |
172 |
Q |
| |
|
||||| |||||||| |||||||||| ||| || | || ||||||| ||||||||| ||||||||||| ||||| |||||||| ||||||||| |||||| |
|
|
| T |
8371899 |
tatcaattgaaatcggtgaaaactctcatccttacgggctgttcaacgattgacaaattggaagaagatatagtgcagatggagtccttgacatcactga |
8371800 |
T |
|
| Q |
173 |
tcgcaaaagatacaggtgtaaaagagatgccatactcaatactaggattgaaaggcatcgcatatatatccctatgtggatgtgaaggattgtcatttga |
272 |
Q |
| |
|
| ||| | |||| | ||||||| | || || ||||||||| |||| | | | || | |||||||||| ||||||| | ||||||||| ||| ||| |
|
|
| T |
8371799 |
taacaactggtacatctataaaagaagttccctattcaatactaagattaagaagtattgtatatatatccatatgtggttatgaaggattatcacatga |
8371700 |
T |
|
| Q |
273 |
agttcttccttc |
284 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
8371699 |
agtttttccttc |
8371688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 36213931 - 36213864
Alignment:
| Q |
91 |
aaaactctaatcttttctggttgttcaaagattgacaagttggaagaagacatagtccagatggaatc |
158 |
Q |
| |
|
|||||||| || ||||||| ||||||||||||||||| |||||||| ||||| | ||||||||||| |
|
|
| T |
36213931 |
aaaactctcattctttctggatgttcaaagattgacaaattggaagaggacatggaacagatggaatc |
36213864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 6449 - 6295
Alignment:
| Q |
10 |
aagaatattctactgctcaatctgaaggactgtacatgtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctg |
109 |
Q |
| |
|
||||||||||| ||| | ||| ||||||| |||||| |||||| || ||| ||| || ||| |||||| ||| ||| |||||||||| ||| ||| || |
|
|
| T |
6449 |
aagaatattcttctgattaatttgaaggattgtacaagtcttggcaatctaccaagggagatctatcagctgatatctgtgaaaactcttatcctttttg |
6350 |
T |
|
| Q |
110 |
gttgttcaaagattgacaagttggaagaagacatagtccagatggaatccttgac |
164 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| ||||| || ||| |||| ||||| |
|
|
| T |
6349 |
gttgttcaaagatcgacaaattggaagaagatatagtgcaaatgaaatctttgac |
6295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 320
Target Start/End: Complemental strand, 6224 - 6139
Alignment:
| Q |
235 |
tatatatccctatgtggatgtgaaggattgtcatttgaagttcttccttctgtcatttggtcttgcgtgccaccaaccatgaattc |
320 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||| ||| ||| ||||||| | ||||||||||| || ||||||| |||||||| |
|
|
| T |
6224 |
tatatatccctatgcggatatgaaggattatcacgtgatgtttttccttcccttatttggtcttggatgtcaccaacaatgaattc |
6139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 5447552 - 5447633
Alignment:
| Q |
77 |
agttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaagaagacatagtccagatggaatc |
158 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||||||| ||||||||||||| ||||||| ||| | | ||||||||||| |
|
|
| T |
5447552 |
agttgaaatctttgaaaactctcattctttctggttgtttaaagattgacaagctggaagaggacttggaacagatggaatc |
5447633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 5433993 - 5434060
Alignment:
| Q |
70 |
atatatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaaga |
137 |
Q |
| |
|
|||||| |||||||||| ||||||||||| ||| || |||| |||| |||||||||||| |||||||| |
|
|
| T |
5433993 |
atatataagttgaaatctttgaaaactctcatccttactggctgtttaaagattgacaatttggaaga |
5434060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 5383291 - 5383372
Alignment:
| Q |
77 |
agttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaagaagacatagtccagatggaatc |
158 |
Q |
| |
|
|||||||||| |||||||||| || |||||||||||| ||||||| |||||||||||| ||||||| || |||||||| |
|
|
| T |
5383291 |
agttgaaatctctgaaaactctcattctttctggttgtttaaagattaccaagttggaagaggacatagaacaaatggaatc |
5383372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 5128533 - 5128473
Alignment:
| Q |
77 |
agttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaaga |
137 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||| || |||||||||||||||||| |
|
|
| T |
5128533 |
agttgaaatctttgaaaactctcattctttctggttgtataatgattgacaagttggaaga |
5128473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 5447122 - 5447182
Alignment:
| Q |
77 |
agttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaaga |
137 |
Q |
| |
|
|||||||||| ||||||||||| | |||||||||||| ||||||||||||| ||||||| |
|
|
| T |
5447122 |
agttgaaatctttgaaaactctcgttctttctggttgtttaaagattgacaaggtggaaga |
5447182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 5425875 - 5425956
Alignment:
| Q |
77 |
agttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaagaagacatagtccagatggaatc |
158 |
Q |
| |
|
|||||||||| |||||||||| || ||||||| ||| || |||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
5425875 |
agttgaaatctctgaaaactctcattctttctgggtgtgtaatgattgacaagttggaagaggacatagaacaaatggaatc |
5425956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 5176704 - 5176764
Alignment:
| Q |
77 |
agttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaaga |
137 |
Q |
| |
|
|||||||||| |||||||| || || ||||||| ||||| | |||||||||||||||||| |
|
|
| T |
5176704 |
agttgaaatctttgaaaacactcattctttctgggtgttcgatgattgacaagttggaaga |
5176764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 5278531 - 5278591
Alignment:
| Q |
77 |
agttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaaga |
137 |
Q |
| |
|
|||||||||| |||||||| || || ||||||| ||||| | |||||||||||||||||| |
|
|
| T |
5278531 |
agttgaaatctttgaaaacactcattctttctgggtgttcgatgattgacaagttggaaga |
5278591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 5354730 - 5354670
Alignment:
| Q |
77 |
agttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaaga |
137 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||| |||| | |||||||||||||| |
|
|
| T |
5354730 |
agttgaaatctttgaaaactctcattctttctggttgtaaaaagttagacaagttggaaga |
5354670 |
T |
|
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Target: scaffold0294 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 9016 - 8935
Alignment:
| Q |
77 |
agttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaagaagacatagtccagatggaatc |
158 |
Q |
| |
|
|||||||||| |||||||||| || ||||||| ||| || |||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
9016 |
agttgaaatctctgaaaactctcattctttctgggtgtataatgattgacaagttggaagaggacatagaacagatggaatc |
8935 |
T |
|
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