View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3598_low_1 (Length: 606)
Name: NF3598_low_1
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 559; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Complemental strand, 3496171 - 3495580
Alignment:
| Q |
1 |
tgttgctagatatgctcgggaagggaattgagtccgccttaataaatccttcagctttattgcctgatccatggcaggcatccgaggagatactatccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3496171 |
tgttgctagatatgctcgggaagggaattgagtccgccttaataaatccttcagctttattgcctgatccatggcaggcatccgaggagatactatccaa |
3496072 |
T |
|
| Q |
101 |
ctttgacatggaagaaatggctgttgaacctgaactaactccatgtattcaggtttgtttgtttacaattgtaaattggaattatagttttttgtttgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3496071 |
ctttgacatggaagaaatggctgttgaacctgaactaactccatgtattcaggtttgtttgtttacaattgtaaattggaattatagttttttgtttgat |
3495972 |
T |
|
| Q |
201 |
ggggagtttatagttttttccatacatacttctatttatatccacactggtaaaataatttannnnnnngcaaatataatacaccatatagataaatata |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3495971 |
ggggagtttatagttttttccatacatacttctatttatatccacactggtaaaataatttatttttttgcaaatataatacaccatatagataaatata |
3495872 |
T |
|
| Q |
301 |
tctaccaacctattaaatgtgtttgtatttgtaaccctttgattgcctcctttctttcaatgagttggtgttgctatgattctgtttaacatttaactgt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3495871 |
tctaccaacctattaaatgtgtttgtatttgtaaccctctgattgcctcctttctttcaatgagttggtgttgctatgattctgtttaacatttaactgt |
3495772 |
T |
|
| Q |
401 |
atatacatctcataactgtttcaatatattatgtaggcctatgttgattcagttattgatctggcatcacatttaatcactcggttgcggcattatgcta |
500 |
Q |
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| T |
3495771 |
atatacatctcataactgtttcaatatattatgtaggcctatgttgattcagttattgatctggcatcacatttgatcactcggttgcggcattatgcta |
3495672 |
T |
|
| Q |
501 |
agatttttcgtacattggcaaatcaagctgtcactgtagccaacggaagcacatctggtggagtgcccaacctaactcttaatccctccatc |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3495671 |
agatttttcgtacattggcaaatcaagctgtcactgtagccagcggaagcacatctggtggagtgcccaacctaactcttaatccctccatc |
3495580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 222 - 536
Target Start/End: Complemental strand, 3510094 - 3509789
Alignment:
| Q |
222 |
atacatacttctatttatatccacactggtaaaataatttannnnnnngcaaatataatacaccatatagataaatatatctaccaacctattaaatgtg |
321 |
Q |
| |
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|||||||||| ||||||||| | |||||||||||||| ||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3510094 |
atacatacttgtatttatattcgcactggtaaaataacttatattgttacatgtataatacaccgtatagataaatatatctaccaacctattaaatgtg |
3509995 |
T |
|
| Q |
322 |
tttgtat-----ttgtaaccctttgattgcctcctttctttcaatgagttggtgttgctatgattctgtttaacatttaactgtatatacatctcataac |
416 |
Q |
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||| ||| |||||||||| |||||||||| |||||||| ||||||||||||||| ||||| |||| |||||||||||||||||||| ||| |
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| T |
3509994 |
tttctatatgtaatgtaacccttcgattgcctcccttctttcagtgagttggtgttgctttgattttgttaaacatttaactgtatatacaactc----- |
3509900 |
T |
|
| Q |
417 |
tgtttcaatatattatgtaggcctatgttgattcagttattgatctggcatcacatttaatcactcggttgcggcattatgctaagatttttcgtacatt |
516 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||| || | | ||| |||| ||||||||| ||||||||| ||| ||||||| | |
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| T |
3509899 |
---------atattacgtaggcctatgttgattcagttcttgatctagctttatcttttttcacacggttgcggtgttatgctaaattttgtcgtacact |
3509809 |
T |
|
| Q |
517 |
ggcaaatcaagctgtcactg |
536 |
Q |
| |
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||||| |||||||| ||||| |
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| T |
3509808 |
ggcaagtcaagctgccactg |
3509789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 3510266 - 3510206
Alignment:
| Q |
116 |
aatggctgttgaacctgaactaactccatgtattcaggtttgtttgtttacaattgtaaatt |
177 |
Q |
| |
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||||||||||||||||| | ||| | |||||||||||||||||||| ||||| ||||||||| |
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| T |
3510266 |
aatggctgttgaacctgcattaaattcatgtattcaggtttgtttg-ttacagttgtaaatt |
3510206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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