View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3598_low_12 (Length: 344)
Name: NF3598_low_12
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 8e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 3455487 - 3455316
Alignment:
| Q |
1 |
ttcttgtgaagagaatatttataatattgaaaaaagcgcaggtgagaaaaagagaaagaatggcaaagctaagggaagaaattgcagttcagaaagcaaa |
100 |
Q |
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| T |
3455487 |
ttcttgtgaagaaaatatttataatatcaaaaaaatcgcaggtgagaaaaagagaaagaatggcaaagctaagggaagaaattgcagttcagaaagcaaa |
3455388 |
T |
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| Q |
101 |
ggaaacagaacttaataaaaccattcacattacaggtttaatcaatcaagccaaatcttaatatatgaattt |
172 |
Q |
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| T |
3455387 |
ggaaacagaacttaataaaaccattcacattacaggtttaatcaatcaagccaaatcttaatatatgaattt |
3455316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 3479851 - 3479681
Alignment:
| Q |
4 |
ttgtgaagagaatatttataatattgaaaaa--agcgcaggtgagaaaaagagaaagaatggcaaagctaagggaagaaattgcagttcagaaagcaaag |
101 |
Q |
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||||||| | |||||||||||| |||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3479851 |
ttgtgaaaataatatttataattttgaaaaacaattgcaggtgagaaaaagagaaaaaatggcaaagctaagggaagaaattgcagttcagaaagcaaag |
3479752 |
T |
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| Q |
102 |
gaaacagaacttaataaaaccattcacattacaggtttaatcaatcaagccaaatcttaatatatgaattt |
172 |
Q |
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| T |
3479751 |
gaaacagaacttaataaaaccattcacattacaggtttaatcaatcaagccaaatcttaatatatgaattt |
3479681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 167 - 327
Target Start/End: Original strand, 3455156 - 3455319
Alignment:
| Q |
167 |
gaatttcagccatgctaacaacaccagaaagtggcgatcttatctcatgagacatcgttgccagcatttgttttgctctcattgtctcctc---tattac |
263 |
Q |
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| T |
3455156 |
gaatttcagccatgctaacaacaccagaaagcggtgatcttatctcatgagacattgttgccaacatttgttttgctctcattgtctcctctattattac |
3455255 |
T |
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| Q |
264 |
aagggatcaagaaaacaatagtaagcttcttgatttcaaatcaaattaattgtaacactgaaat |
327 |
Q |
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| T |
3455256 |
aagggatcaagaaaacaataataagcttcttgatatcaaatcaaattaattgtaacactaaaat |
3455319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 175 - 327
Target Start/End: Original strand, 3479529 - 3479684
Alignment:
| Q |
175 |
gccatgctaacaacaccagaaagtggcgatcttatctcatgagacatcgttgccagcatttgttttgctctcattgtctcctc---tattacaagggatc |
271 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3479529 |
gccatgctaacaacatcagaaagtggtgatcttatctcatgagacattgttgccaacatttgttttgctctcattgtctcctctattattacaagggatc |
3479628 |
T |
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| Q |
272 |
aagaaaacaatagtaagcttcttgatttcaaatcaaattaattgtaacactgaaat |
327 |
Q |
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| T |
3479629 |
aagaaaacaataataagcttcttgatatcaaatcaaattcattgtaacactaaaat |
3479684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 48695247 - 48695152
Alignment:
| Q |
167 |
gaatttcagccatgctaacaacaccagaaagtggcgatcttatctcatgagacatcgttgccagcatttgttttgctctcattgtctcctctatta |
262 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||| ||||||||||| || |||||||||| |
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| T |
48695247 |
gaatttcagccatgctaacaacaccagaaagtggagatcttatctcatgtgacattgttgccagcacttgctttgctctcatagtttcctctatta |
48695152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 48694965 - 48695063
Alignment:
| Q |
40 |
aggtgagaaaaagagaaagaatggcaaagctaagggaagaaattgcagttcagaaagcaaaggaaacagaacttaataaaaccattcacattacaggtt |
138 |
Q |
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|||| |||||||||||||| ||||| ||| | | ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48694965 |
aggttagaaaaagagaaaggatggcgaagattcgcgaagagattgctgttcagaaagcaaaggaaacagaactgaataaaaccattcacattacaggtt |
48695063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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