View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3598_low_17 (Length: 300)

Name: NF3598_low_17
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3598_low_17
NF3598_low_17
[»] chr1 (16 HSPs)
chr1 (13-281)||(5388958-5389228)
chr1 (137-280)||(30685579-30685728)
chr1 (163-271)||(24449616-24449725)
chr1 (137-272)||(7002474-7002613)
chr1 (138-270)||(46814121-46814259)
chr1 (163-280)||(24684179-24684296)
chr1 (161-280)||(5459437-5459557)
chr1 (137-274)||(31584695-31584837)
chr1 (130-279)||(41920735-41920890)
chr1 (177-280)||(46692519-46692624)
chr1 (161-269)||(6804825-6804934)
chr1 (137-229)||(40216161-40216258)
chr1 (175-270)||(24659217-24659313)
chr1 (137-223)||(14320658-14320749)
chr1 (137-221)||(27031496-27031585)
chr1 (13-110)||(5398501-5398591)
[»] chr7 (22 HSPs)
chr7 (162-281)||(38306536-38306656)
chr7 (137-280)||(31971790-31971939)
chr7 (137-278)||(47325540-47325686)
chr7 (137-274)||(5859938-5860081)
chr7 (161-280)||(44353248-44353368)
chr7 (161-280)||(10244457-10244577)
chr7 (165-274)||(25161092-25161201)
chr7 (137-271)||(33434486-33434626)
chr7 (164-280)||(41089431-41089547)
chr7 (165-280)||(3867392-3867508)
chr7 (137-270)||(34391469-34391608)
chr7 (131-274)||(3419048-3419195)
chr7 (137-279)||(43482183-43482330)
chr7 (174-280)||(40726202-40726309)
chr7 (137-280)||(37795273-37795422)
chr7 (137-280)||(37795601-37795750)
chr7 (161-274)||(3419342-3419454)
chr7 (137-274)||(42454389-42454532)
chr7 (163-264)||(6585179-6585281)
chr7 (164-227)||(48161728-48161790)
chr7 (137-200)||(35745487-35745555)
chr7 (161-223)||(11378805-11378866)
[»] chr8 (22 HSPs)
chr8 (137-280)||(12897931-12898080)
chr8 (161-274)||(27889129-27889243)
chr8 (161-274)||(27947787-27947901)
chr8 (163-280)||(32065971-32066088)
chr8 (161-280)||(20138703-20138823)
chr8 (137-279)||(31207017-31207165)
chr8 (137-278)||(37986510-37986657)
chr8 (161-280)||(24995079-24995199)
chr8 (161-280)||(36631100-36631219)
chr8 (161-275)||(9519788-9519903)
chr8 (137-270)||(15821032-15821170)
chr8 (137-276)||(22773902-22774047)
chr8 (137-272)||(16457130-16457270)
chr8 (137-266)||(35815899-35816034)
chr8 (181-280)||(34388711-34388811)
chr8 (164-274)||(41893093-41893202)
chr8 (137-266)||(3584028-3584164)
chr8 (161-279)||(35821534-35821651)
chr8 (161-219)||(13538324-13538382)
chr8 (161-219)||(13686092-13686150)
chr8 (161-224)||(10837921-10837984)
chr8 (168-270)||(38577477-38577580)
[»] chr4 (19 HSPs)
chr4 (161-280)||(27555615-27555735)
chr4 (161-280)||(30964714-30964834)
chr4 (147-278)||(20464868-20465005)
chr4 (137-270)||(4305994-4306130)
chr4 (165-262)||(35329302-35329400)
chr4 (165-280)||(8255304-8255420)
chr4 (165-280)||(8268722-8268838)
chr4 (161-280)||(36689489-36689609)
chr4 (137-223)||(46698434-46698525)
chr4 (137-227)||(7703018-7703112)
chr4 (131-221)||(35341000-35341097)
chr4 (131-280)||(30167212-30167369)
chr4 (165-223)||(49528421-49528479)
chr4 (161-221)||(2826118-2826178)
chr4 (137-229)||(8705795-8705892)
chr4 (168-224)||(31050352-31050408)
chr4 (131-209)||(9750116-9750198)
chr4 (161-229)||(11281409-11281477)
chr4 (165-224)||(52868800-52868859)
[»] scaffold0434 (1 HSPs)
scaffold0434 (161-280)||(2357-2477)
[»] chr5 (10 HSPs)
chr5 (138-280)||(29087755-29087896)
chr5 (137-280)||(18593519-18593668)
chr5 (161-278)||(34378378-34378496)
chr5 (161-280)||(18313338-18313448)
chr5 (137-280)||(7161669-7161818)
chr5 (161-229)||(7452917-7452985)
chr5 (165-266)||(698658-698760)
chr5 (161-273)||(5656777-5656890)
chr5 (177-228)||(41250893-41250944)
chr5 (167-219)||(18255140-18255192)
[»] chr3 (21 HSPs)
chr3 (138-272)||(2392159-2392299)
chr3 (138-272)||(2393922-2394062)
chr3 (161-274)||(47235981-47236095)
chr3 (163-272)||(45164139-45164248)
chr3 (161-280)||(31483157-31483277)
chr3 (140-280)||(34475416-34475562)
chr3 (161-267)||(30352123-30352230)
chr3 (161-280)||(19176783-19176903)
chr3 (131-270)||(40023218-40023363)
chr3 (161-280)||(43012654-43012774)
chr3 (131-227)||(21343678-21343779)
chr3 (164-266)||(9583740-9583843)
chr3 (167-272)||(17551242-17551348)
chr3 (161-270)||(50305258-50305368)
chr3 (161-224)||(23328032-23328095)
chr3 (130-224)||(50559978-50560077)
chr3 (131-280)||(53248177-53248332)
chr3 (161-224)||(45399119-45399182)
chr3 (137-223)||(4463740-4463831)
chr3 (161-204)||(37158660-37158703)
chr3 (177-221)||(25506770-25506814)
[»] chr2 (21 HSPs)
chr2 (137-279)||(39338516-39338665)
chr2 (162-280)||(387453-387572)
chr2 (161-280)||(10524375-10524495)
chr2 (161-278)||(41877236-41877354)
chr2 (137-220)||(14436922-14437010)
chr2 (137-270)||(5254540-5254678)
chr2 (137-270)||(14106178-14106314)
chr2 (165-270)||(14405487-14405591)
chr2 (161-274)||(22888576-22888690)
chr2 (137-223)||(3745676-3745767)
chr2 (161-224)||(17116572-17116635)
chr2 (137-209)||(43248882-43248959)
chr2 (137-221)||(43816102-43816191)
chr2 (164-224)||(7874610-7874670)
chr2 (161-222)||(13512523-13512584)
chr2 (163-223)||(45311490-45311550)
chr2 (137-203)||(15457817-15457888)
chr2 (137-224)||(7461010-7461101)
chr2 (166-209)||(7455601-7455644)
chr2 (211-272)||(25281033-25281095)
chr2 (138-194)||(25280971-25281032)
[»] chr6 (7 HSPs)
chr6 (165-278)||(3117773-3117887)
chr6 (137-280)||(3254234-3254383)
chr6 (161-280)||(15944276-15944396)
chr6 (163-280)||(10542108-10542226)
chr6 (169-223)||(33697789-33697843)
chr6 (226-280)||(14663357-14663411)
chr6 (137-209)||(15132495-15132572)
[»] scaffold0172 (1 HSPs)
scaffold0172 (137-279)||(19196-19344)
[»] scaffold0085 (1 HSPs)
scaffold0085 (164-274)||(48618-48729)
[»] scaffold0343 (1 HSPs)
scaffold0343 (137-272)||(5989-6131)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 5388958 - 5389228
Alignment:
Q  13 aatatccatcgacaaaaggaaaataaaatacttattcatagttcatacttacactatggcaaaatttactgcttctgttgttttggttcttcttgttgtg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5388958 aatatccatcgacaaaaggaaaataaaatacttattcatagttcatacttacactatggcaaaatttactgcttctgttgttttggttcttcttgttgtg 5389057  T
Q  113 ccgatannnnnnnnnnn-gaatccacaaatattattaaacgtcatcctcacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggca 211  Q
     ||||             |||||   ||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5389058 gcgattttttttttttttgaatcggaaaatattattaaacgccatccccacgcaaggtatggacgaaataagatacaaatggtgccgcatatagacggca 5389157  T
Q  212 caccataaccacct-aaaacacccccagagataaaccaaccaaaacacatcaccacctaaaacaaactccc 281  Q
    ||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5389158 cactataaccacctaaaaacacccctagagataaaccaaccaaaacacatcaccacctaaaacaaactccc 5389228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 30685579 - 30685728
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaac 230  Q
    |||||||||||||||||||||| |     |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||    
T  30685579 caaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacctaaaaac 30685678  T
Q  231 acccccagagataaaccaaccaaaacacatcaccacctaaaacaaactcc 280  Q
    |||||   ||||||||| |||||||||||||||||||||||||| |||||    
T  30685679 acccctgaagataaacccaccaaaacacatcaccacctaaaacagactcc 30685728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 24449616 - 24449725
Alignment:
Q  163 gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacacatc 261  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | |||||||||| ||||||||||  |||||||||||||    
T  24449616 gcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacataaaaacacccctagagataaacacaccaaaacacatc 24449715  T
Q  262 accacctaaa 271  Q
    ||||||||||    
T  24449716 accacctaaa 24449725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 137 - 272
Target Start/End: Complemental strand, 7002613 - 7002474
Alignment:
Q  137 caaatattattaaacgtcatcctcac-----gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaaca 231  Q
    |||||||||||||||||||||||| |     | |||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||| |    
T  7002613 caaatattattaaacgtcatcctcgcaaaatgtaaggtatggacgaaacaagatacaaaaggtgccgcatataaacggtacaccataaccacttaaaa-a 7002515  T
Q  232 cccccagagataaaccaaccaaaacacatcaccacctaaaa 272  Q
     ||| ||||||||||| ||||||||||||||||||||||||    
T  7002514 accctagagataaacccaccaaaacacatcaccacctaaaa 7002474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 138 - 270
Target Start/End: Original strand, 46814121 - 46814259
Alignment:
Q  138 aaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaacac 232  Q
    ||||||||||||||| |||||||     ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |     
T  46814121 aaatattattaaacgccatcctcgcaagacgtaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccaccaaacaaag 46814220  T
Q  233 ccccag-agataaaccaaccaaaacacatcaccacctaa 270  Q
    |||| | ||||||||| ||||||||||||||||||||||    
T  46814221 cccctgaagataaacctaccaaaacacatcaccacctaa 46814259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 163 - 280
Target Start/End: Original strand, 24684179 - 24684296
Alignment:
Q  163 gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacacatc 261  Q
    |||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||   ||||||||| |||||||||||||    
T  24684179 gcaaggtatgaac-aaacaagatacaaatggtgccacatatagacggtacaccataatcacctaaaaacacccctgaagataaacccaccaaaacacatc 24684277  T
Q  262 accacctaaaacaaactcc 280  Q
    |||||||||||||||||||    
T  24684278 accacctaaaacaaactcc 24684296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 5459557 - 5459437
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |||| |||||   ||||||||  |||||||||||    
T  5459557 acgcaaggtatggacgaagcaacatacaaatggtgccgcatatagacggtacaccataaccacctaaaaatacccctgaagataaactcaccaaaacaca 5459458  T
Q  260 tcaccacctaaaacaaactcc 280  Q
    |||| || |||||||||||||    
T  5459457 tcactacttaaaacaaactcc 5459437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 137 - 274
Target Start/End: Original strand, 31584695 - 31584837
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaac 230  Q
    |||||||||||||||  |||||||     |||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||    
T  31584695 caaatattattaaacaccatcctcgcaagacgcaaggtatg-acgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacctaaaaac 31584793  T
Q  231 acccccagagataaaccaaccaaaacacatcaccacctaaaaca 274  Q
    |||||   ||||||||| |||||||||  |||||||||||||||    
T  31584794 acccctgaagataaacccaccaaaacatgtcaccacctaaaaca 31584837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 130 - 279
Target Start/End: Complemental strand, 41920890 - 41920735
Alignment:
Q  130 gaatccacaaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacc 224  Q
    ||||| ||||||||||||||||||||||  |     ||| ||||||||||||||| || |||||||| |||| |||||||||||| ||||| ||||||||    
T  41920890 gaatcgacaaatattattaaacgtcatctccgcaagacgtaaggtatggacgaaataaaatacaaattgtgctgcatatagacggtacaccgtaaccacc 41920791  T
Q  225 t-aaaacacccccagagataaaccaaccaaaacacatcaccacctaaaacaaactc 279  Q
    | |||||||||    ||||||||||||||||| ||| |||||||||||||||||||    
T  41920790 taaaaacacccgtgaagataaaccaaccaaaatacaccaccacctaaaacaaactc 41920735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 46692519 - 46692624
Alignment:
Q  177 aaacaagatacaaatggtgccgcatatagacggcacaccataaccacct--aaaacacccccagagataaaccaaccaaaacacatcaccacctaaaaca 274  Q
    |||||||||| ||||||||||||||| |||||| |||||||||||||||  ||||||||||   |||||||||  |||||||||||||||||||||||||    
T  46692519 aaacaagataaaaatggtgccgcataaagacggtacaccataaccacctaaaaaacacccctgaagataaaccctccaaaacacatcaccacctaaaaca 46692618  T
Q  275 aactcc 280  Q
    ||||||    
T  46692619 aactcc 46692624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 161 - 269
Target Start/End: Complemental strand, 6804934 - 6804825
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaaca---cccccagagataaaccaaccaaaaca 257  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |   |||| || ||||| || |||||||||    
T  6804934 acgcaaggtatggacgaaa-aagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaaaaaccccgag-gataatcccaccaaaaca 6804837  T
Q  258 catcaccaccta 269  Q
    ||||||||||||    
T  6804836 catcaccaccta 6804825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 40216161 - 40216258
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaa 229  Q
    ||||||||||||||||||||||||     |||| || |||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  40216161 caaatattattaaacgtcatcctcgcaagacgccagatatggacgaatcaagatacaaatggtgccgcatatagacggtacatcataaccacctaaaa 40216258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 24659313 - 24659217
Alignment:
Q  175 cgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaacacccccag-agataaaccaaccaaaacacatcaccacctaa 270  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| || | | |||| | ||||||||| |||||||||||| |||||||||    
T  24659313 cgaaacaagatacaaatggtgccgcatatagacggtacaccataaccaccaaacaaagcccctgaagataaacccaccaaaacacataaccacctaa 24659217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 14320749 - 14320658
Alignment:
Q  137 caaatattattaaacgtcatcctcac-----gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccac 223  Q
    |||||||||||||||||||||| |||     ||||||||||||| |||| | |||||||||||| ||||||||||||| |||||||||||||    
T  14320749 caaatattattaaacgtcatccccacaagatgcaaggtatggacaaaaccaaatacaaatggtgtcgcatatagacggtacaccataaccac 14320658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 27031496 - 27031585
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataacc 221  Q
    ||||||||||||||||||||||||     ||||||| |||||||| ||||| ||| ||||||||||||||||| |||| |||||||||||    
T  27031496 caaatattattaaacgtcatcctcgcaagacgcaagatatggacggaacaatatataaatggtgccgcatatatacggtacaccataacc 27031585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 5398501 - 5398591
Alignment:
Q  13 aatatccatcgacaaaaggaaaataaaatacttattcatagttcatacttacactatggcaaaatttactgcttctgttgttttggttcttcttgttg 110  Q
    ||||||||||||||| |||||||||||||||| |||||       ||||||||||||||||||||  ||||||||  ||||||||||||| |||||||    
T  5398501 aatatccatcgacaagaggaaaataaaatactcattca-------tacttacactatggcaaaatccactgcttcacttgttttggttctccttgttg 5398591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 162 - 281
Target Start/End: Complemental strand, 38306656 - 38306536
Alignment:
Q  162 cgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacacat 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| | ||||||||||||||||||||||    
T  38306656 cgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccctaaagataaaccaaccaaaacacat 38306557  T
Q  261 caccacctaaaacaaactccc 281  Q
    |||||||||||||||||||||    
T  38306556 caccacctaaaacaaactccc 38306536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 31971790 - 31971939
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaac 230  Q
    |||||||||||||||| ||||| |     ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  31971790 caaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 31971889  T
Q  231 acccccagagataaaccaaccaaaacacatcaccacctaaaacaaactcc 280  Q
    |||||   ||||||||| |||||||||||| |||||||||||||||||||    
T  31971890 acccctgaagataaacccaccaaaacacataaccacctaaaacaaactcc 31971939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 137 - 278
Target Start/End: Original strand, 47325540 - 47325686
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaaca 231  Q
    ||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |    
T  47325540 caaatattattaaacgtcatcctcgtaagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacctaaaa-a 47325638  T
Q  232 cccccaga-gataaaccaaccaaaacacatcaccacctaaaacaaact 278  Q
    | | | || |||||||| ||||||||||||||||||||||||||||||    
T  47325639 cactctgaagataaacccaccaaaacacatcaccacctaaaacaaact 47325686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 137 - 274
Target Start/End: Original strand, 5859938 - 5860081
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaac 230  Q
    |||||||||||||||||||||| |     ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  5859938 caaatattattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaac 5860037  T
Q  231 acccccagagataaaccaaccaaaacacatcaccacctaaaaca 274  Q
    ||||| | |||||| || ||||||||||||||||||||||||||    
T  5860038 acccctaaagataatcccaccaaaacacatcaccacctaaaaca 5860081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 161 - 280
Target Start/End: Original strand, 44353248 - 44353368
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||   |||||||||| |||||||||||    
T  44353248 acgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacctaaaaacacccatggagataaacccaccaaaacaca 44353347  T
Q  260 tcaccacctaaaacaaactcc 280  Q
    ||||||||||||||| |||||    
T  44353348 tcaccacctaaaacagactcc 44353368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 10244577 - 10244457
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||   ||||||  | || ||||||||    
T  10244577 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacaccataaccacctaaaaacacccctgaagataagtccacgaaaacaca 10244478  T
Q  260 tcaccacctaaaacaaactcc 280  Q
    |||||||||||||||||||||    
T  10244477 tcaccacctaaaacaaactcc 10244457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 165 - 274
Target Start/End: Complemental strand, 25161201 - 25161092
Alignment:
Q  165 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaacacccccagagataaaccaaccaaaacacatcacc 264  Q
    |||||||| |||||||||||| |||||||||||| |||||||||| |||||||||||||||||||   |||  |||||||||| ||||||||||||||||    
T  25161201 aaggtatgaacgaaacaagatgcaaatggtgccgtatatagacggtacaccataaccacctaaaaacaccctggagataaacccaccaaaacacatcacc 25161102  T
Q  265 acctaaaaca 274  Q
    ||||||||||    
T  25161101 acctaaaaca 25161092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 137 - 271
Target Start/End: Original strand, 33434486 - 33434626
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaac 230  Q
    |||||||||||||||| ||||| |     |||||||||||||||||| ||||||||||||||| | | |||||||||| ||||||||||||||| |||||    
T  33434486 caaatattattaaacgccatccccgcaatacgcaaggtatggacgaagcaagatacaaatggttctgtatatagacggtacaccataaccacctaaaaac 33434585  T
Q  231 acccccagagataaaccaaccaaaacacatcaccacctaaa 271  Q
    |||||  || ||||||| |||||||||||||||||||||||    
T  33434586 acccctggaaataaacccaccaaaacacatcaccacctaaa 33434626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 164 - 280
Target Start/End: Original strand, 41089431 - 41089547
Alignment:
Q  164 caaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacacatca 262  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||    ||||||| | ||||||||||||||    
T  41089431 caaggtatggacgaaacaagatacaa-tggtgccgcatatagacggtacaccataaccacctaaaaacacccatgaagataaatccaccaaaacacatca 41089529  T
Q  263 ccacctaaaacaaactcc 280  Q
     ||||||||||| |||||    
T  41089530 tcacctaaaacagactcc 41089547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 165 - 280
Target Start/End: Complemental strand, 3867508 - 3867392
Alignment:
Q  165 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacacatcac 263  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||| || | ||||||||||   ||||||||  |||||||||||||||    
T  3867508 aaggtattgacgaaacaagatacaaatggtgccacatatagacggtacaccataacaacataaaaacacccctgaagataaactcaccaaaacacatcac 3867409  T
Q  264 cacctaaaacaaactcc 280  Q
    |||| ||||||||||||    
T  3867408 cacccaaaacaaactcc 3867392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 137 - 270
Target Start/End: Complemental strand, 34391608 - 34391469
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaaca 231  Q
    |||||||||||||||||||||| |     ||||| |||||||||||||||||||||||||  |||||||||||||||  |||||||||||||| || | |    
T  34391608 caaatattattaaacgtcatccccgcaggacgcagggtatggacgaaacaagatacaaataatgccgcatatagacgatacaccataaccaccaaacaaa 34391509  T
Q  232 cccccag-agataaaccaaccaaaacacatcaccacctaa 270  Q
     |||| | ||||||||| ||||||||||||||||||||||    
T  34391508 gcccctgaagataaacccaccaaaacacatcaccacctaa 34391469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 274
Target Start/End: Original strand, 3419048 - 3419195
Alignment:
Q  131 aatccacaaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct 225  Q
    |||| ||||||||||||||||||||||| |     |||||||||||||||||||||||||||||| | ||||||  |||||||| |||||||||||||||    
T  3419048 aatcgacaaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaacgttgccgc--atagacggtacaccataaccacct 3419145  T
Q  226 -aaaacacccccagagataaaccaaccaaaacacatcaccacctaaaaca 274  Q
     ||||||| ||   ||||||||  ||||||||||| ||||||||||||||    
T  3419146 aaaaacactcctgaagataaactcaccaaaacacaacaccacctaaaaca 3419195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 279
Target Start/End: Complemental strand, 43482330 - 43482183
Alignment:
Q  137 caaatattattaaacgtcatcctc----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaaca 231  Q
    |||||||||||||||||||||| |    ||||||||||||||||||| ||||||||||| |||| ||||| |||||| |||||| |||||||| ||||||    
T  43482330 caaatattattaaacgtcatccccgtagacgcaaggtatggacgaaataagatacaaatagtgctgcatacagacggtacaccacaaccacctaaaaaca 43482231  T
Q  232 cccccagagataaaccaaccaaaacacatcaccacctaaaacaaactc 279  Q
     ||   |||||||||| || |||||||| |||||||||||||| ||||    
T  43482230 tccattgagataaacccacaaaaacacaacaccacctaaaacagactc 43482183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 174 - 280
Target Start/End: Original strand, 40726202 - 40726309
Alignment:
Q  174 acgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacacatcaccacctaaaa 272  Q
    ||||||||| ||||||||| |||  ||||||||||| ||||||||||||||| ||||||||||  |||||||||| |||||||||||| |||||||||||    
T  40726202 acgaaacaaaatacaaatgatgctacatatagacggtacaccataaccacctaaaaacacccctggagataaacccaccaaaacacattaccacctaaaa 40726301  T
Q  273 caaactcc 280  Q
    || |||||    
T  40726302 cagactcc 40726309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 280
Target Start/End: Complemental strand, 37795422 - 37795273
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaac 230  Q
    |||||||||||||||||| ||| |     ||||||||||||||||||||||||||||||||||| |||   || |||| ||||||||||||||| |||||    
T  37795422 caaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacctaaaaac 37795323  T
Q  231 acccccagagataaaccaaccaaaacacatcaccacctaaaacaaactcc 280  Q
    ||||    ||||||||| || |||||| |||||||||||||||| |||||    
T  37795322 acccatgaagataaacccacaaaaacatatcaccacctaaaacagactcc 37795273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 280
Target Start/End: Complemental strand, 37795750 - 37795601
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaac 230  Q
    |||||||||||||||||| ||| |     ||||||||||||||||||||||||||||||||||| |||   || |||| ||||||||||||||| |||||    
T  37795750 caaatattattaaacgtcgtccccacaagacgcaaggtatggacgaaacaagatacaaatggtgtcgcgattaaacggtacaccataaccacctaaaaac 37795651  T
Q  231 acccccagagataaaccaaccaaaacacatcaccacctaaaacaaactcc 280  Q
    ||||    ||||||||| || |||||| |||||||||||||||| |||||    
T  37795650 acccatgaagataaacccacaaaaacatatcaccacctaaaacagactcc 37795601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 274
Target Start/End: Original strand, 3419342 - 3419454
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    |||||||||||||||||||||||||||||| | ||||||  |||||||| ||||||||||||||| ||||||| ||   ||||||||  |||||||||||    
T  3419342 acgcaaggtatggacgaaacaagatacaaacgttgccgc--atagacggtacaccataaccacctaaaaacactcctgaagataaactcaccaaaacaca 3419439  T
Q  260 tcaccacctaaaaca 274  Q
     ||||||||||||||    
T  3419440 acaccacctaaaaca 3419454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 137 - 274
Target Start/End: Original strand, 42454389 - 42454532
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaaca 231  Q
    ||||||||||||||| |||||| |     ||||||| ||| ||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |    
T  42454389 caaatattattaaacatcatccccgcaagacgcaagatatagacgaaacaaggtacaaatggtgccgcatatagacagtacaccataaccacctaaaaaa 42454488  T
Q  232 cccccag-agataaaccaaccaaaacacatcaccacctaaaaca 274  Q
      ||  | ||||||||| |||||||||||||   ||||||||||    
T  42454489 atccttgaagataaacccaccaaaacacatccttacctaaaaca 42454532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 264
Target Start/End: Complemental strand, 6585281 - 6585179
Alignment:
Q  163 gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaa-aacacccccagagataaaccaaccaaaacacatc 261  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || || |||||   ||||||| | ||| |||||||||    
T  6585281 gcaaggaatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccaccaaacaaaacccctgaagataaagccacctaaacacatc 6585182  T
Q  262 acc 264  Q
    |||    
T  6585181 acc 6585179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 48161728 - 48161790
Alignment:
Q  164 caaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaa 227  Q
    |||| |||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||    
T  48161728 caagatatggacgaa-caaaatacaaatagtgccgcatatagacggcacaccataaccacctaa 48161790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 35745487 - 35745555
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgca 200  Q
    |||||||||||||||||||||  |     ||||||||||||||||||||||||||||||||||| ||||    
T  35745487 caaatattattaaacgtcatctccgtaaaacgcaaggtatggacgaaacaagatacaaatggtgtcgca 35745555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 11378805 - 11378866
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccac 223  Q
    ||||||||||||||||||  |||||||| ||| ||||||||||| |||| |||||||||||||    
T  11378805 acgcaaggtatggacgaat-aagatacagatgatgccgcatataaacggtacaccataaccac 11378866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 12897931 - 12898080
Alignment:
Q  137 caaatattattaaacgtcatcctcac-----gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaac 230  Q
    |||||||||||||||||||||| | |     ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||    
T  12897931 caaatattattaaacgtcatccccgcaagatgcaagatatggacgaaacaagatacaaatggtgccgcatatagacggtacaccattaccacctaaaaac 12898030  T
Q  231 acccccagagataaaccaaccaaaacacatcaccacctaaaacaaactcc 280  Q
    |||||   ||||||||| ||||||||||||||||||||||||||||||||    
T  12898031 acccctgaagataaacccaccaaaacacatcaccacctaaaacaaactcc 12898080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 161 - 274
Target Start/End: Complemental strand, 27889243 - 27889129
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||  |||||||||| |||||||||||    
T  27889243 acgcaaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacccctggagataaacccaccaaaacaca 27889144  T
Q  260 tcaccacctaaaaca 274  Q
    |||||||||||||||    
T  27889143 tcaccacctaaaaca 27889129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 161 - 274
Target Start/End: Complemental strand, 27947901 - 27947787
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||  |||||||||| |||||||||||    
T  27947901 acgcaaggtattgacgaaacaagatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacccctggagataaacccaccaaaacaca 27947802  T
Q  260 tcaccacctaaaaca 274  Q
    |||||||||||||||    
T  27947801 tcaccacctaaaaca 27947787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 163 - 280
Target Start/End: Original strand, 32065971 - 32066088
Alignment:
Q  163 gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacacatc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||   ||||||||| |||||||||||||    
T  32065971 gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtaca-cataaccacctaaaaacacccctgaagataaacccaccaaaacacatc 32066069  T
Q  262 accacctaaaacaaactcc 280  Q
    |||||||||||||||||||    
T  32066070 accacctaaaacaaactcc 32066088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 20138823 - 20138703
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||   |||||||||| |||||||||||    
T  20138823 acgcaaagtatggacgaaacaagatacaaatggtgccgcatatagatggtacaccataaccacctaaaaacacccatggagataaacccaccaaaacaca 20138724  T
Q  260 tcaccacctaaaacaaactcc 280  Q
    ||||||||||||||| |||||    
T  20138723 tcaccacctaaaacagactcc 20138703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 137 - 279
Target Start/End: Original strand, 31207017 - 31207165
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaac 230  Q
    |||||||||||||||| |||||||     |||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| |||||    
T  31207017 caaatattattaaacgccatcctcgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatataaacggtacaccataaccacctaaaaac 31207116  T
Q  231 acccccagagataaaccaaccaaaacacatcaccacctaaaacaaactc 279  Q
    || ||   ||||||||  |||||||||||||||||||||||||| ||||    
T  31207117 actcctgaagataaactcaccaaaacacatcaccacctaaaacagactc 31207165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 137 - 278
Target Start/End: Original strand, 37986510 - 37986657
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaac 230  Q
    |||||||||||||| ||||||| |     |||||||| | ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||    
T  37986510 caaatattattaaatgtcatccccgcaagacgcaaggcacggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacctaaaaac 37986609  T
Q  231 acccccagagataaaccaaccaaaacacatcaccacctaaaacaaact 278  Q
    ||||| | ||||||||| |  |||||||||||||||||||||||||||    
T  37986610 acccctaaagataaacccattaaaacacatcaccacctaaaacaaact 37986657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 161 - 280
Target Start/End: Original strand, 24995079 - 24995199
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||| ||||||||||   ||||||||| |||||||||      
T  24995079 acgcaaggtatggacgaaacaagatacaaatggtgccgcttatagacagtacaccataaccacctaaaaacacccctgaagataaacccaccaaaacatg 24995178  T
Q  260 tcaccacctaaaacaaactcc 280  Q
    |||||||||||||||| ||||    
T  24995179 tcaccacctaaaacaatctcc 24995199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 36631219 - 36631100
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||   ||||||||| |||||||||||    
T  36631219 acgcaaggtatgaa-gaaacaagatacaaatggtgccgcatatagacggtacaccataatcacctaaaaacacccctgaagataaacccaccaaaacaca 36631121  T
Q  260 tcaccacctaaaacaaactcc 280  Q
    ||||||||||||||| |||||    
T  36631120 tcaccacctaaaacagactcc 36631100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 9519903 - 9519788
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||||    |||||||| ||||||||||     
T  9519903 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacagtacatcataaccacctaaaaacacccctgatgataaacccaccaaaacacg 9519804  T
Q  260 tcaccacctaaaacaa 275  Q
    ||||||||||||||||    
T  9519803 tcaccacctaaaacaa 9519788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 270
Target Start/End: Original strand, 15821032 - 15821170
Alignment:
Q  137 caaatattattaaacgtcatcctc----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaa-aaca 231  Q
    |||||||||||||||||||||||     |||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| || || |    
T  15821032 caaatattattaaacgtcatcctgcaagacgcaaggtatggacggaacaagatacaaatggtgccgcatatagacggtataccataaccaccaaataaaa 15821131  T
Q  232 cccccagagataaaccaaccaaaacacatcaccacctaa 270  Q
    ||||   ||||||| | ||||||||||||||||||||||    
T  15821132 cccctgaagataaaaccaccaaaacacatcaccacctaa 15821170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 276
Target Start/End: Complemental strand, 22774047 - 22773902
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaa-c 230  Q
    |||||||||||||||| ||||| |     |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||| |    
T  22774047 caaatattattaaacgccatccccgcaagacgcaaggtatggacgaaactagatacaaatggtgccgcatatagacggtacaccataaccatctaaaaac 22773948  T
Q  231 acccccagagataaaccaaccaaaacacatcaccacctaaaacaaa 276  Q
    |||     ||||||||| ||||||||| ||||||||||||||||||    
T  22773947 accagtgaagataaacccaccaaaacatatcaccacctaaaacaaa 22773902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 272
Target Start/End: Original strand, 16457130 - 16457270
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaaca 231  Q
    ||||||||||||||||||||||       ||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |    
T  16457130 caaatattattaaacgtcatccctgcaagacgtaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataaccacctaaaaaa 16457229  T
Q  232 cccccagagataaaccaaccaaaacacatcaccacctaaaa 272  Q
     ||     ||||| |  ||||||||||||||||||||||||    
T  16457230 tccttgaggataatcgcaccaaaacacatcaccacctaaaa 16457270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 266
Target Start/End: Original strand, 35815899 - 35816034
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaaca 231  Q
    |||||||||||||||| |||||||     ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || || | |    
T  35815899 caaatattattaaacgccatcctcgcaaaacgcaaggtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataacccccaaacaaa 35815998  T
Q  232 cccccag-agataaaccaaccaaaacacatcaccac 266  Q
     |||  | ||||||||| |||||||| |||||||||    
T  35815999 gcccatgaagataaacccaccaaaacccatcaccac 35816034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 181 - 280
Target Start/End: Original strand, 34388711 - 34388811
Alignment:
Q  181 aagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacacatcaccacctaaaacaaactc 279  Q
    ||||||||||| |||| |||||||||||| ||||||||||||||| |||||||||    ||||||||| | |||||||||||||||||||||||||||||    
T  34388711 aagatacaaatagtgctgcatatagacggtacaccataaccacctaaaaacacccgtgaagataaacccagcaaaacacatcaccacctaaaacaaactc 34388810  T
Q  280 c 280  Q
    |    
T  34388811 c 34388811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 274
Target Start/End: Original strand, 41893093 - 41893202
Alignment:
Q  164 caaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaacacccccagagataaaccaaccaaaacacatcac 263  Q
    ||||||||| |||||| || |||||||||||| ||||||||||||| ||||||||||||||||||| |  |||   |||||| | |||||||||||||||    
T  41893093 caaggtatgaacgaaaaaa-atacaaatggtgtcgcatatagacggtacaccataaccacctaaaaaaaacccgaggataaatccaccaaaacacatcac 41893191  T
Q  264 cacctaaaaca 274  Q
     ||||||||||    
T  41893192 tacctaaaaca 41893202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 137 - 266
Target Start/End: Complemental strand, 3584164 - 3584028
Alignment:
Q  137 caaatattattaaacgtcatcctcac-----gcaaggtatggacgaaacaa-gatacaaatggtgccgcatatagacggcacaccataaccacctaa-aa 229  Q
    |||||||||||||||| ||||| |||     || ||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| || ||    
T  3584164 caaatattattaaacgccatccccacaagacgcgaggtatgaacgaaacaaagatacaaatggtgccgcatatagacggtacaccataaccaccaaacaa 3584065  T
Q  230 cacccccagagataaaccaaccaaaacacatcaccac 266  Q
      ||||   ||||||||| ||||| ||||||||||||    
T  3584064 agccccttaagataaacccaccaacacacatcaccac 3584028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 161 - 279
Target Start/End: Complemental strand, 35821651 - 35821534
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaacacccccagagataaaccaaccaaaacacat 260  Q
    |||||||| |||||||||||| |||||||||| |||||||||||||||| ||||||||||||| ||||| ||| |    ||||| |  ||||||  ||||    
T  35821651 acgcaagg-atggacgaaacatgatacaaatgatgccgcatatagacggtacaccataaccacttaaaaaacctctgaggataatctcaccaaactacat 35821553  T
Q  261 caccacctaaaacaaactc 279  Q
    |||||||||||||| ||||    
T  35821552 caccacctaaaacagactc 35821534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 13538382 - 13538324
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataa 219  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||||| ||| |||||    
T  13538382 acgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13538324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 13686092 - 13686150
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataa 219  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||||| ||| |||||    
T  13686092 acgcaaggtatggacgaaagaatatacaaatggtaccgcatatagacggtacatcataa 13686150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 10837921 - 10837984
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacc 224  Q
    |||||||| ||| || ||| ||||| ||||| ||||||||||||||||| ||||||||||||||    
T  10837921 acgcaaggaatgaacaaaataagatgcaaatcgtgccgcatatagacggtacaccataaccacc 10837984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 38577477 - 38577580
Alignment:
Q  168 gtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaa-aacacccccagagataaaccaaccaaaacacatcaccac 266  Q
    ||||| ||||||||| ||||||||| |||||||||||||||| |||  ||||| ||| || || |  |    ||||||||| ||||||||||||||||||    
T  38577477 gtatgaacgaaacaatatacaaatgatgccgcatatagacggtacaaaataactaccaaacaaaatacatgaagataaacccaccaaaacacatcaccac 38577576  T
Q  267 ctaa 270  Q
    ||||    
T  38577577 ctaa 38577580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 280
Target Start/End: Original strand, 27555615 - 27555735
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| ||||||||||   ||||||||| |||||||||||    
T  27555615 acgcaaggtatggacgaaacaagatacaaattgtgccgcatatagatggtacaccataaccacctaaaaacacccctgaagataaacccaccaaaacaca 27555714  T
Q  260 tcaccacctaaaacaaactcc 280  Q
    |||||||||||||||||||||    
T  27555715 tcaccacctaaaacaaactcc 27555735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 30964834 - 30964714
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||| ||||||||||||||| ||||||| ||  |||||||||| |||||||||||    
T  30964834 acgcaaggtatggacgaaacaagatacaaatgatgttgcatatagacggtacaccataaccacctaaaaacactcctggagataaacccaccaaaacaca 30964735  T
Q  260 tcaccacctaaaacaaactcc 280  Q
    ||||||||||||||| |||||    
T  30964734 tcaccacctaaaacagactcc 30964714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 278
Target Start/End: Complemental strand, 20465005 - 20464868
Alignment:
Q  147 taaacgtcatcctcac-----gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagag 240  Q
    ||||||||||||||||     |||||||||| | ||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||   ||    
T  20465005 taaacgtcatcctcacaagatgcaaggtatgaaagaaacaagatacaaatggtgccgtatatagacggtacaccataaccacctaaaaacacccctgaag 20464906  T
Q  241 ataaaccaaccaaaacacatcaccacctaaaacaaact 278  Q
    ||||||| ||||| | ||||||||||||||||||||||    
T  20464905 ataaacccaccaacatacatcaccacctaaaacaaact 20464868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 137 - 270
Target Start/End: Complemental strand, 4306130 - 4305994
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaaca 231  Q
    |||||||||||||| ||||||| |     |||||||||||| |||||| |||||| |||||||||||||||||||||| ||||||||||||||||||| |    
T  4306130 caaatattattaaatgtcatccccggaagacgcaaggtatgaacgaaa-aagatataaatggtgccgcatatagacggtacaccataaccacctaaaaaa 4306032  T
Q  232 cccccagagataaaccaaccaaaacacatcaccacctaa 270  Q
      || || ||||| || ||||||||||||||||||||||    
T  4306031 atccgag-gataatcccaccaaaacacatcaccacctaa 4305994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 165 - 262
Target Start/End: Complemental strand, 35329400 - 35329302
Alignment:
Q  165 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaacacccccaga-gataaaccaaccaaaacacatca 262  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||   |||  || |||||||| ||||||||||||||    
T  35329400 aaggtatggacgaaacaagatacaaatggtgctgcatatagacggtacaccataaccacctaaaaatacccatgaagataaacccaccaaaacacatca 35329302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 165 - 280
Target Start/End: Complemental strand, 8255420 - 8255304
Alignment:
Q  165 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacacatcac 263  Q
    ||||| ||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||| ||||||| ||   ||||||||  || ||||||||||||    
T  8255420 aaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataaccacctaaaaacactcctgaagataaactcacaaaaacacatcac 8255321  T
Q  264 cacctaaaacaaactcc 280  Q
    ||||||||||| |||||    
T  8255320 cacctaaaacagactcc 8255304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 165 - 280
Target Start/End: Complemental strand, 8268838 - 8268722
Alignment:
Q  165 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacacatcac 263  Q
    ||||| ||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||| ||||||| ||   ||||||||  || ||||||||||||    
T  8268838 aaggtgtggacgagacaagatacaaatgatgccgcatatagacggtacatcataaccacctaaaaacactcctgaagataaactcacaaaaacacatcac 8268739  T
Q  264 cacctaaaacaaactcc 280  Q
    ||||||||||| |||||    
T  8268738 cacctaaaacagactcc 8268722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 161 - 280
Target Start/End: Original strand, 36689489 - 36689609
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    |||| |||||||||||||| ||||||||||||||  ||||||||||||| |||| |||||||| | ||||||||||   ||||||||  |||||||||||    
T  36689489 acgcgaggtatggacgaaataagatacaaatggtatcgcatatagacggtacactataaccacttaaaaacacccctgaagataaactcaccaaaacaca 36689588  T
Q  260 tcaccacctaaaacaaactcc 280  Q
    |||||| |||||||| |||||    
T  36689589 tcaccatctaaaacatactcc 36689609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 46698434 - 46698525
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccac 223  Q
    ||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46698434 caaatattattaaacgtcatccatgaaagacgcaaggtatggtcgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 46698525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 7703112 - 7703018
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaa 227  Q
    |||||||||||||||||||||| |     || ||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  7703112 caaatattattaaacgtcatccccgcaagacacaaggtatggatgaaa-aagatacaaatggtgccgcatatagacggtacaccataaccacctaa 7703018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 35341000 - 35341097
Alignment:
Q  131 aatccacaaatattattaaacgtcatcctcacgcaag-------gtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataacc 221  Q
    |||| ||||||||||||||||||||||| | ||||||       |||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  35341000 aatcaacaaatattattaaacgtcatccccccgcaagacgcaatgtatggacgaaacaagatacaaatggtgccacatatagacggtacaccataacc 35341097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 280
Target Start/End: Original strand, 30167212 - 30167369
Alignment:
Q  131 aatccacaaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgc--cgcatatagacggcacaccataaccac 223  Q
    |||| |||||||||||||||||||||||||     |||||||||||||||||||||||||||||||| |||     |||||||||| |||| |||||||     
T  30167212 aatcgacaaatattattaaacgtcatcctcgcaagacgcaaggtatggacgaaacaagatacaaatgatgcaaaaaatatagacggtacactataaccat 30167311  T
Q  224 ct-aaaacacccccagagataaaccaaccaaaacacatcaccacctaaaacaaactcc 280  Q
    || |||| ||| |   ||||||||| |||||||||||||||  ||||||||| |||||    
T  30167312 ctaaaaataccactgaagataaacccaccaaaacacatcacatcctaaaacagactcc 30167369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 49528479 - 49528421
Alignment:
Q  165 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccac 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  49528479 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccaaaaccac 49528421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 2826178 - 2826118
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataacc 221  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||    
T  2826178 acgcaaggtatggacggaacaagatacaaatggtgccgcatatatacggtacaccataacc 2826118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 8705795 - 8705892
Alignment:
Q  137 caaatattattaaacgtcatcc--tca---cgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaa 229  Q
    ||||||||||||||||||||||  |||   ||| ||||||||||||  || |||||||||||||| |||||||||||| |||||||||||||||||||    
T  8705795 caaatattattaaacgtcatcccttcaagacgcgaggtatggacgaggcaggatacaaatggtgctgcatatagacggtacaccataaccacctaaaa 8705892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 31050352 - 31050408
Alignment:
Q  168 gtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacc 224  Q
    ||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||    
T  31050352 gtatggacgaaacaagatacaaatgatgtcgcatatagacggtacaccataaccacc 31050408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 9750198 - 9750116
Alignment:
Q  131 aatccacaaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacgg 209  Q
    |||| ||||||||||||||||||||||| |     ||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  9750198 aatcgacaaatattattaaacgtcatccccgcaagacgca-ggtttggacgaaacaagatacaaatggtgccgcatatagacgg 9750116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 11281409 - 11281477
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaa 229  Q
    ||||||| ||||||||||||| |||| ||||||||| | |||||||||| | |||||||||||||||||    
T  11281409 acgcaagatatggacgaaacatgatataaatggtgctgtatatagacggtataccataaccacctaaaa 11281477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 52868800 - 52868859
Alignment:
Q  165 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacc 224  Q
    |||||||| |||||  ||||||||||||||| ||| ||||||||| ||||||||||||||    
T  52868800 aaggtatgaacgaattaagatacaaatggtgtcgcgtatagacggtacaccataaccacc 52868859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 161 - 280
Target Start/End: Original strand, 2357 - 2477
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||    ||||||||| |||||| ||||    
T  2357 acgcaaggtatggacgaaacaagatacagatggtgccgcatatagacggtacaccataaccacctaaaaacacccttgaagataaacccaccaaaccaca 2456  T
Q  260 tcaccacctaaaacaaactcc 280  Q
    |||||||||||||||||||||    
T  2457 tcaccacctaaaacaaactcc 2477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 29087896 - 29087755
Alignment:
Q  138 aaatattattaaacgtcatcctcacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacaccccc 236  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| |||     
T  29087896 aaatattattaaacgtcatccct--gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataaccacctaaaaacaaccct 29087799  T
Q  237 agagataaaccaaccaaaacacatcaccacctaaaacaaactcc 280  Q
      ||||||||| |||||||||||||| ||||||||||| |||||    
T  29087798 gaagataaacccaccaaaacacatcagcacctaaaacagactcc 29087755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 280
Target Start/End: Complemental strand, 18593668 - 18593519
Alignment:
Q  137 caaatattattaaacgtcatcctcac-----gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaac 230  Q
    |||||||||||||||||||||| | |     |||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| |||||    
T  18593668 caaatattattaaacgtcatccccgcaagatgcaaggtatggacgaaacaagataaatatggtgccgcatatagacggtacaccataaccacctaaaaac 18593569  T
Q  231 acccccagagataaaccaaccaaaacacatcaccacctaaaacaaactcc 280  Q
    |||||   |||||||||  ||||||||||||||||||||| |||||||||    
T  18593568 acccctgaagataaacccgccaaaacacatcaccacctaacacaaactcc 18593519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 161 - 278
Target Start/End: Complemental strand, 34378496 - 34378378
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    |||||||| |||||||| || |||||||||||||||||||||||||||| |||||||||||| || ||||||||||   ||||||||| || ||||||||    
T  34378496 acgcaaggcatggacgagacgagatacaaatggtgccgcatatagacggtacaccataaccatctaaaaacacccctgaagataaacccacaaaaacaca 34378397  T
Q  260 tcaccacctaaaacaaact 278  Q
    |||||||||||||||||||    
T  34378396 tcaccacctaaaacaaact 34378378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 280
Target Start/End: Original strand, 18313338 - 18313448
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaacacccccagagataaaccaaccaaaacacat 260  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||         ||||||||| | |||||||||| ||||||||||||    
T  18313338 acgcaaggtatggatgaaacaagatgcaaatggtgccgcatatagacggtacacca---------aaaacaccctcggagataaacccaccaaaacacat 18313428  T
Q  261 caccacctaaaacaaactcc 280  Q
    |||||||||||||| |||||    
T  18313429 caccacctaaaacagactcc 18313448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 7161669 - 7161818
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaac 230  Q
    |||||||||||||||||| ||| |     ||||||| ||||||||||| ||||||||||| |||  |||||||||||| ||||||||| ||||| |||||    
T  7161669 caaatattattaaacgtcttccccacaagacgcaagatatggacgaaataagatacaaatagtgtagcatatagacggtacaccataatcacctaaaaac 7161768  T
Q  231 acccccagagataaaccaaccaaaacacatcaccacctaaaacaaactcc 280  Q
    |||||   | ||||||| ||||||||||||||| |||||||||| |||||    
T  7161769 acccctgaatataaacccaccaaaacacatcactacctaaaacagactcc 7161818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 7452985 - 7452917
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaa 229  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7452985 acgcaaggtatggacaaatcaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaa 7452917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 698760 - 698658
Alignment:
Q  165 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacacatcac 263  Q
    |||||||||| |||| | ||||||||||||||||||||||||||| |||| |||||||||| |||||||||    ||||||||| |||||| ||||||||    
T  698760 aaggtatggatgaaatatgatacaaatggtgccgcatatagacggtacactataaccacctaaaaacacccttgaagataaacctaccaaaccacatcac 698661  T
Q  264 cac 266  Q
    |||    
T  698660 cac 698658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 273
Target Start/End: Original strand, 5656777 - 5656890
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    |||||||||||| |||||| |||||||||||| |||||||||||||||| |||  |||||||||| ||||||| ||   ||||||| | ||||||||||     
T  5656777 acgcaaggtatgaacgaaataagatacaaatgatgccgcatatagacggtacatgataaccacctaaaaacacaccttaagataaatccaccaaaacacg 5656876  T
Q  260 tcaccacctaaaac 273  Q
     |||||||||||||    
T  5656877 ccaccacctaaaac 5656890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 41250893 - 41250944
Alignment:
Q  177 aaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaa 228  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||| ||||    
T  41250893 aaacaagatataaatggtgccgcatatagacggtacaccataaccacgtaaa 41250944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 18255140 - 18255192
Alignment:
Q  167 ggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataa 219  Q
    ||||| ||||||||||||||||||| ||||||||||||||||| ||| |||||    
T  18255140 ggtatagacgaaacaagatacaaatagtgccgcatatagacggtacatcataa 18255192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 138 - 272
Target Start/End: Original strand, 2392159 - 2392299
Alignment:
Q  138 aaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaaca 231  Q
    ||||||||||||||||||||| |     ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  2392159 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 2392258  T
Q  232 cccccagagataaaccaaccaaaacacatcaccacctaaaa 272  Q
    ||||   | ||||||| |||||||||||||||| |||||||    
T  2392259 cccctgaaaataaacccaccaaaacacatcaccgcctaaaa 2392299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 138 - 272
Target Start/End: Original strand, 2393922 - 2394062
Alignment:
Q  138 aaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaaca 231  Q
    ||||||||||||||||||||| |     ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  2393922 aaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaaca 2394021  T
Q  232 cccccagagataaaccaaccaaaacacatcaccacctaaaa 272  Q
    ||||   | ||||||| |||||||||||||||| |||||||    
T  2394022 cccctgaaaataaacccaccaaaacacatcaccgcctaaaa 2394062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 161 - 274
Target Start/End: Complemental strand, 47236095 - 47235981
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || ||||||||||  |||||||||| ||||||| |||    
T  47236095 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtataccataaccatctaaaaacacccctggagataaacccaccaaaataca 47235996  T
Q  260 tcaccacctaaaaca 274  Q
    |||||||||||||||    
T  47235995 tcaccacctaaaaca 47235981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 45164248 - 45164139
Alignment:
Q  163 gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaacacccccagagataaaccaaccaaaacacatca 262  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||   |||  |||||||||| ||||||||||||||    
T  45164248 gcaaggtatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacaccctggagataaacccaccaaaacacatca 45164149  T
Q  263 ccacctaaaa 272  Q
    ||||||||||    
T  45164148 ccacctaaaa 45164139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 31483277 - 31483157
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||  |||||||||  |||||||||||    
T  31483277 acgcaaggtatgaacaaaacaagatacaaatggtgctgcatatagacggtacaccataaccacctaaaaacacccctggagataaactcaccaaaacaca 31483178  T
Q  260 tcaccacctaaaacaaactcc 280  Q
    ||||| |||||||||||||||    
T  31483177 tcaccgcctaaaacaaactcc 31483157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 280
Target Start/End: Original strand, 34475416 - 34475562
Alignment:
Q  140 atattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaa-aacacc 233  Q
    ||||||||||||||||||| |     ||||| |||||| |||||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||    
T  34475416 atattattaaacgtcatccccgcaagacgcagggtatgaacgaaacaagatacaaatggtgccccatatagacggtataccataaccacctaagaacacc 34475515  T
Q  234 cccagagataaaccaaccaaaacacatcaccacctaaaacaaactcc 280  Q
    ||  |||||||||  |||||||||||||||||||||||||| |||||    
T  34475516 cctggagataaactcaccaaaacacatcaccacctaaaacagactcc 34475562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 161 - 267
Target Start/End: Original strand, 30352123 - 30352230
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||   |||||| || |||||||||||    
T  30352123 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagaaggtacaccataaccacctaaaaacacccctgaagataagcccaccaaaacaca 30352222  T
Q  260 tcaccacc 267  Q
    ||||||||    
T  30352223 tcaccacc 30352230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 19176903 - 19176783
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||| |||| |||||   ||| ||||| |||||||||||    
T  19176903 acgcaaagtatggacgaaacatgatacaaatggtgccgcatatagacggtacaccataacgacctaaaaatacccctgaagacaaacccaccaaaacaca 19176804  T
Q  260 tcaccacctaaaacaaactcc 280  Q
    | ||||||||||||| |||||    
T  19176803 taaccacctaaaacagactcc 19176783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 131 - 270
Target Start/End: Original strand, 40023218 - 40023363
Alignment:
Q  131 aatccacaaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct 225  Q
    |||| |||||||||||||||| |||||| |     |||||  ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||     
T  40023218 aatcaacaaatattattaaacatcatccccgcaagacgcattgtatggacgaaacaagatacaaatgatgccgcatatagacggtacaccataaccacca 40023317  T
Q  226 aaaacacccccag-agataaaccaaccaaaacacatcaccacctaa 270  Q
    || | | |||| | ||||||||| | ||||||||||||||||||||    
T  40023318 aacaaagcccctgaagataaacccatcaaaacacatcaccacctaa 40023363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 43012774 - 43012654
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||  ||||||||||||||| ||||||| ||   ||| ||||| ||||||| |||    
T  43012774 acgcaaggtatgaacgaaacaatatacaaatggtgccgcatatagacgatacaccataaccacctaaaaacactcctgaagaaaaacccaccaaaagaca 43012675  T
Q  260 tcaccacctaaaacaaactcc 280  Q
    |||||| |||||||| |||||    
T  43012674 tcaccatctaaaacagactcc 43012654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 21343779 - 21343678
Alignment:
Q  131 aatccacaaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct 225  Q
    |||| |||||||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  21343779 aatcgacaaatattattaaacgtcatcccggcaagacacaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacatcataaccacct 21343680  T
Q  226 aa 227  Q
    ||    
T  21343679 aa 21343678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 9583740 - 9583843
Alignment:
Q  164 caaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacacatca 262  Q
    |||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||| ||||    | ||||||| ||||||||||||||    
T  9583740 caaggtatagacgaaacaagatacaaatggtgccgcatatagacgatacaccataaccacctaaaaatacccttgaaaataaacccaccaaaacacatca 9583839  T
Q  263 ccac 266  Q
    ||||    
T  9583840 ccac 9583843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 272
Target Start/End: Complemental strand, 17551348 - 17551242
Alignment:
Q  167 ggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaa-cacccccagagataaaccaaccaaaacacatcacca 265  Q
    |||||| ||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| |||| |   | | ||||| |||||||||||||||||    
T  17551348 ggtatgaacgaaacaaaatacaaatggtgccgcatatagactgtacaccataaccacctaaaaacacctctgaaaaaaaacccaccaaaacacatcacca 17551249  T
Q  266 cctaaaa 272  Q
    |||||||    
T  17551248 cctaaaa 17551242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 50305258 - 50305368
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaacacccccag-agataaaccaaccaaaacaca 259  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| | || | | |||| | ||||||||| ||||||||||     
T  50305258 acgcaaggtatggacggaacaagatacaaatggtgtcgcatatagacggtacaccataaccatcaaataaagcccctgaagataaacccaccaaaacact 50305357  T
Q  260 tcaccacctaa 270  Q
     ||||||||||    
T  50305358 acaccacctaa 50305368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 23328032 - 23328095
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacc 224  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  23328032 acgcaaggtatggacgaaacaagatataaatggtgccgcatatatacggtacaccataaccacc 23328095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 50560077 - 50559978
Alignment:
Q  130 gaatccacaaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacc 224  Q
    ||||| |||||||||||||||||||||||||     ||||||| |||||||||||||||||||||| | ||||||| ||||||||  |||||||||||||    
T  50560077 gaatcaacaaatattattaaacgtcatcctcgcaatacgcaagatatggacgaaacaagatacaaaagatgccgcacatagacggtgcaccataaccacc 50559978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 131 - 280
Target Start/End: Complemental strand, 53248332 - 53248177
Alignment:
Q  131 aatccacaaatattattaaacgtcatcctcac-----gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct 225  Q
    |||| ||||||||||||||||||||||| | |     | ||||||||||| ||||||||||||||||||| |||||||||   | |||||||||||| ||    
T  53248332 aatcgacaaatattattaaacgtcatccccgcaaggcgtaaggtatggacaaaacaagatacaaatggtgtcgcatataggttgtacaccataaccatct 53248233  T
Q  226 -aaaacacccccagagataaaccaaccaaaacacatcaccacctaaaacaaactcc 280  Q
     |||||| |||   |||||| || || ||||||||||||||||||||||| |||||    
T  53248232 aaaaacaaccctgaagataaccccacaaaaacacatcaccacctaaaacagactcc 53248177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 45399182 - 45399119
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacc 224  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  45399182 acgcgaggtatgaacgaaacaagatacaaacggtgccgcatatagacggtacaccataaccacc 45399119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 4463740 - 4463831
Alignment:
Q  137 caaatattattaaacgtcatcctcac-----gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccac 223  Q
    ||||||||||||||||||| || |||     |||||  ||||||||||||| | ||||||||||||||||||||||||  ||||||||||||    
T  4463740 caaatattattaaacgtcaaccccacaagacgcaagacatggacgaaacaacacacaaatggtgccgcatatagacggtgcaccataaccac 4463831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 37158703 - 37158660
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatata 204  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  37158703 acgcaaggtatggacgaaacaggatacaaatggtgccgcatata 37158660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 25506770 - 25506814
Alignment:
Q  177 aaacaagatacaaatggtgccgcatatagacggcacaccataacc 221  Q
    |||||| |||||||||||||||||||||||||| |||||||||||    
T  25506770 aaacaatatacaaatggtgccgcatatagacggtacaccataacc 25506814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 279
Target Start/End: Original strand, 39338516 - 39338665
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaac 230  Q
    |||||||||||||||| |||| ||     |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  39338516 caaatattattaaacgccatcatcgtaagacgcaatgtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctgaaaac 39338615  T
Q  231 acccccagagataaaccaaccaaaacacatca-ccacctaaaacaaactc 279  Q
    |||||   ||||||||| |||||||||||||| |||||||||||| ||||    
T  39338616 acccctgaagataaacccaccaaaacacatcacccacctaaaacagactc 39338665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 162 - 280
Target Start/End: Complemental strand, 387572 - 387453
Alignment:
Q  162 cgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacacat 260  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||    ||||||||| ||||||||||||    
T  387572 cgcagggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccacttaaaaacacccatgaagataaacccaccaaaacacat 387473  T
Q  261 caccacctaaaacaaactcc 280  Q
    |||||||||||||| |||||    
T  387472 caccacctaaaacagactcc 387453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 10524495 - 10524375
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||||| ||||||||||   ||||||||| ||||||||||     
T  10524495 acgcaaggtatggacgaaacaatatacaaatggtgcagcatatagatggtacaccataaccacctaaaaacacccctgaagataaacccaccaaaacacg 10524396  T
Q  260 tcaccacctaaaacaaactcc 280  Q
    |||||  ||||||||||||||    
T  10524395 tcaccgtctaaaacaaactcc 10524375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 161 - 278
Target Start/End: Original strand, 41877236 - 41877354
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacaca 259  Q
    ||||||| |||||||||||||| ||||||||||| ||| |||||||||| ||||||||||||||| ||||||||||   |||||||||  | ||||||||    
T  41877236 acgcaagatatggacgaaacaatatacaaatggtaccgtatatagacggtacaccataaccacctgaaaacacccctgaagataaaccctctaaaacaca 41877335  T
Q  260 tcaccacctaaaacaaact 278  Q
    ||||  |||||||||||||    
T  41877336 tcactgcctaaaacaaact 41877354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 14436922 - 14437010
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataac 220  Q
    |||||||||||||||| ||||| |     ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14436922 caaatattattaaacgccatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataac 14437010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 270
Target Start/End: Complemental strand, 5254678 - 5254540
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaaca 231  Q
    ||||||||||||||||||||||||     ||| ||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||| || || | |    
T  5254678 caaatattattaaacgtcatcctcgcaagacgtaaggtatggacgaaata-gatacaaatggtgccgcatatagacggtacaccataacctccaaacaaa 5254580  T
Q  232 cccccag-agataaaccaaccaaaacacatcaccacctaa 270  Q
     | |  | ||||||||| ||||||||||||||||||||||    
T  5254579 gctcatgaagataaacccaccaaaacacatcaccacctaa 5254540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 270
Target Start/End: Original strand, 14106178 - 14106314
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaaca 231  Q
    |||||||||||||||| |||||||     ||||| |||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| || |      
T  14106178 caaatattattaaacgccatcctcgcaagacgcagggtatg-acgaaacaagatagaaatggtgccgcatatagacggtacaccataaccaccaaacaag 14106276  T
Q  232 cccccagagataaaccaaccaaaacacatcaccacctaa 270  Q
    ||||   |||| |||| ||||||||||| ||||||||||    
T  14106277 cccctgaagat-aacccaccaaaacacaacaccacctaa 14106314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 270
Target Start/End: Complemental strand, 14405591 - 14405487
Alignment:
Q  165 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaa-aacacccccagagataaaccaaccaaaacacatcac 263  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| ||  |||| | |||| |||| |||||||||||||||    
T  14405591 aaggtatgaacgaa-caagatacaaatggtgctgcatatagacggtacaccataaccacctaacaaagcccctaaagat-aacctaccaaaacacatcac 14405494  T
Q  264 cacctaa 270  Q
    |||||||    
T  14405493 cacctaa 14405487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 274
Target Start/End: Original strand, 22888576 - 22888690
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaa-aacacccccagagataaaccaaccaaaacaca 259  Q
    |||||| ||||||| |||||||| || |||||||||| ||||||||||| | | |||||||| |||| ||||||||   ||||||||| |||||||| ||    
T  22888576 acgcaatgtatggatgaaacaaggtagaaatggtgccacatatagacggtatatcataaccaactaagaacacccctgaagataaacccaccaaaacgca 22888675  T
Q  260 tcaccacctaaaaca 274  Q
    |||||||||||||||    
T  22888676 tcaccacctaaaaca 22888690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 3745767 - 3745676
Alignment:
Q  137 caaatattattaaacgtcatcctca-----cgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccac 223  Q
    |||||||||||||| ||||||| ||     ||||||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||    
T  3745767 caaatattattaaatgtcatccccataagacgcaaggtatggacgaaacaagatacaaatggtgctgcatatagatggtacatcataaccac 3745676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 17116572 - 17116635
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacc 224  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| |||| |||||||||    
T  17116572 acgcaaggtatggacgagacaagatacaaatgatgccgcatatagacggtacactataaccacc 17116635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 43248882 - 43248959
Alignment:
Q  137 caaatattattaaacgtcatcctcacg-----caaggtatggacgaaacaagatacaaatggtgccgcatatagacgg 209  Q
    ||||||||||||||||||||||||||      ||||||||||||||||||||||| |||||| |||||||||||||||    
T  43248882 caaatattattaaacgtcatcctcacaagacacaaggtatggacgaaacaagatataaatggcgccgcatatagacgg 43248959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 43816102 - 43816191
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataacc 221  Q
    |||||||||||||||||||| | |     ||||||||||||||||||||||  |||||||| |||||||||||||||| |||||||||||    
T  43816102 caaatattattaaacgtcattcccgcaaaacgcaaggtatggacgaaacaaagtacaaatgatgccgcatatagacggtacaccataacc 43816191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 7874670 - 7874610
Alignment:
Q  164 caaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacc 224  Q
    |||||||| ||| ||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  7874670 caaggtatagacaaaacaagatacaaatggcgccgcatatagacggtacaccataaccacc 7874610  T

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Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 13512523 - 13512584
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataacca 222  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||||||| ||| ||||||||    
T  13512523 acgcaatgtatggacgaaacaaaatacaaatgatgccgcatatagacggtacaacataacca 13512584  T

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Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 45311490 - 45311550
Alignment:
Q  163 gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccac 223  Q
    |||||| | |||||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  45311490 gcaaggaaaggacgaaacaagatacaaatggtgccacatatatacggaacaccataaccac 45311550  T

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Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 15457888 - 15457817
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatat 203  Q
    |||||| ||||||||||||||| |     ||||| | |||||||||||||||||||||||||||||||||||    
T  15457888 caaataatattaaacgtcatccccgcaagacgcatgatatggacgaaacaagatacaaatggtgccgcatat 15457817  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 7461101 - 7461010
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacc 224  Q
    |||||||||||||||||||||| |     |||||  ||||| ||||||||| ||||||||||||  |||||||||| | ||||||||||||||    
T  7461101 caaatattattaaacgtcatccccgcaagacgcagagtatg-acgaaacaaaatacaaatggtgttgcatatagacagtacaccataaccacc 7461010  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 7455644 - 7455601
Alignment:
Q  166 aggtatggacgaaacaagatacaaatggtgccgcatatagacgg 209  Q
    ||||||| |||||| |||||||||||||||||||| ||||||||    
T  7455644 aggtatgaacgaaataagatacaaatggtgccgcaaatagacgg 7455601  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 25281033 - 25281095
Alignment:
Q  211 acaccataaccacctaaaa-cacccccagagataaaccaaccaaaacacatcaccacctaaaa 272  Q
    ||||||||||||||||||| ||||| |  | |||||| ||||||||||| |||||||||||||    
T  25281033 acaccataaccacctaaaaacaccctcgaaaataaactaaccaaaacacgtcaccacctaaaa 25281095  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 25280971 - 25281032
Alignment:
Q  138 aaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggt 194  Q
    ||||||||||||||||||||| |     ||||| |||||||||||||||||||| |||||||    
T  25280971 aaatattattaaacgtcatccccacaagacgcagggtatggacgaaacaagatataaatggt 25281032  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 3117887 - 3117773
Alignment:
Q  165 aaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacacatcac 263  Q
    ||||||||||||||| |||||||||||||||| |||||||||||  ||||||||||||||| |||||||| ||| ||||||||| |||||| ||||||||    
T  3117887 aaggtatggacgaaataagatacaaatggtgcagcatatagacgctacaccataaccacctaaaaacacctccaaagataaacctaccaaaccacatcac 3117788  T
Q  264 cacctaaaacaaact 278  Q
    |||||||||||||||    
T  3117787 cacctaaaacaaact 3117773  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 280
Target Start/End: Complemental strand, 3254383 - 3254234
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaac 230  Q
    |||||||||||||||||||||| |     |||||||||||||||||||||||||||||||||||||| |||||||  | |||||||| |||||| |||||    
T  3254383 caaatattattaaacgtcatccccgcaagacgcaaggtatggacgaaacaagatacaaatggtgccgtatatagatagtacaccatagccacctaaaaac 3254284  T
Q  231 acccccagagataaaccaaccaaaacacatcaccacctaaaacaaactcc 280  Q
    |||||   | ||||||| ||||||| |||||||||||||||||| |||||    
T  3254283 acccctgaaaataaacccaccaaaatacatcaccacctaaaacagactcc 3254234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 15944396 - 15944276
Alignment:
Q  161 acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaacacccccagag-ataaaccaaccaaaacaca 259  Q
    |||||||||||||||  || ||||||||||||||| ||||||||||||| ||||||||| |||||||||   |||| ||  ||||||| |||||||||||    
T  15944396 acgcaaggtatggacagaagaagatacaaatggtgtcgcatatagacggtacaccataaacacctaaaaatacccctgaatataaacccaccaaaacaca 15944297  T
Q  260 tcaccacctaaaacaaactcc 280  Q
    ||||||||||||||| |||||    
T  15944296 tcaccacctaaaacagactcc 15944276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 163 - 280
Target Start/End: Complemental strand, 10542226 - 10542108
Alignment:
Q  163 gcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacacatc 261  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||||  ||||||||||||||| ||||||||||   ||||||||| | ||||  ||| |    
T  10542226 gcaagatatgaacgaaacaagatacaaaaggtgccgcatatagacgatacaccataaccacctaaaaacacccctgaagataaacccatcaaattacacc 10542127  T
Q  262 accacctaaaacaaactcc 280  Q
    |||||||||||||||||||    
T  10542126 accacctaaaacaaactcc 10542108  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 33697789 - 33697843
Alignment:
Q  169 tatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccac 223  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33697789 tatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataaccac 33697843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 14663411 - 14663357
Alignment:
Q  226 aaaacacccccagagataaaccaaccaaaacacatcaccacctaaaacaaactcc 280  Q
    ||||||||||  |||||||||| || ||||||||||||||||||||||| |||||    
T  14663411 aaaacacccctggagataaacccacgaaaacacatcaccacctaaaacagactcc 14663357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 15132495 - 15132572
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacgg 209  Q
    |||||||||||||||| |||| ||     ||| ||||||||||| |||||||||||||||| ||||| ||||||||||    
T  15132495 caaatattattaaacgccatcatcgcaagacgtaaggtatggacaaaacaagatacaaatgatgccgtatatagacgg 15132572  T

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Target: scaffold0172 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 137 - 279
Target Start/End: Complemental strand, 19344 - 19196
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataa-ccacctaaaac 230  Q
    ||||||||||||||||||||||||     ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||     
T  19344 caaatattattaaacgtcatcctcgcaagacgcatggtatggacgaaacaagatacaaatggtgccgcatatagacggtacaccataacccacctaaaaa 19245  T
Q  231 acccccagagataaaccaaccaaaacacatcaccacctaaaacaaactc 279  Q
    |   |   ||||||||| ||||||| |||||||||||||||||| ||||    
T  19244 aaatctgaagataaacccaccaaaatacatcaccacctaaaacagactc 19196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 164 - 274
Target Start/End: Complemental strand, 48729 - 48618
Alignment:
Q  164 caaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacct-aaaacacccccagagataaaccaaccaaaacacatca 262  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||  | |||||| || ||||||||||||||    
T  48729 caagatatggactaaacaagatacaaatggtgccgcatatagacggtacaccataaccacctaaaaacacccttaaagataatcctaccaaaacacatca 48630  T
Q  263 ccacctaaaaca 274  Q
     |||||||||||    
T  48629 tcacctaaaaca 48618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 272
Target Start/End: Complemental strand, 6131 - 5989
Alignment:
Q  137 caaatattattaaacgtcatcctc-----acgcaaggtatggacgaaacaagatacaaatggtgccgcatatagacggcacaccataaccacctaaaa-c 230  Q
    |||||||||||||||||||||| |     ||||||| |||| |||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||| |    
T  6131 caaatattattaaacgtcatccccgcaagacgcaagatatgaacgagacaagatacaaatggtgccgtatatagacgttacatcataaccacctaaaaac 6032  T
Q  231 acccccagagataaacca-accaaaacacatcaccacctaaaa 272  Q
    ||| |   |||||||||  || |||||||||||||||||||||    
T  6031 acctctgaagataaaccccacaaaaacacatcaccacctaaaa 5989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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