View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3598_low_20 (Length: 264)
Name: NF3598_low_20
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 26229874 - 26229638
Alignment:
| Q |
10 |
aagaaaatacatggaatttgtgtttctcaatatgtgttatttagatatgcattgtatctcacatcgtataaaatacaatttaaatgtatgtgatgttagt |
109 |
Q |
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| T |
26229874 |
aagaaaatacatggaatttgtgtttctcaatatgtgttatttagacatgcactgtgtctcacatcgtataaaatacaatttaaatgtatgtgatgttagt |
26229775 |
T |
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| Q |
110 |
gtaatatcgcgctcgtcaagttcgaaaatttagcagtcgatgtatcagagggagagtgtccaagaaggttatggtaaaacagaaaatactattatacagt |
209 |
Q |
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| T |
26229774 |
gtaacatcccgctcgtcaagtccgaaaatttagcagtcgatgtatcagagggagagtgtccaggaaggttatggtaaaacagaaaatactattatacagt |
26229675 |
T |
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| Q |
210 |
gtcagttatgtgtgggttaaactatcagtgtcggaat |
246 |
Q |
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| T |
26229674 |
gtaagttatgtgtgggttaaactatcagtgtcggaat |
26229638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 26222448 - 26222404
Alignment:
| Q |
10 |
aagaaaatacatggaatttgtgtttctcaatatgtgttatttaga |
54 |
Q |
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| T |
26222448 |
aagaaaatacatggaatttgagtttcttgatatgtgttatttaga |
26222404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 10700743 - 10700814
Alignment:
| Q |
146 |
tcgatgtatcagagggagagtgtccaagaaggttatggtaaaacagaaaatactattatacagtgtcagtta |
217 |
Q |
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| T |
10700743 |
tcgatgtatcagagggagagtgtccaggaaggttatggcaagacggaagatactatgatgcagtgtcagtta |
10700814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 10914513 - 10914584
Alignment:
| Q |
146 |
tcgatgtatcagagggagagtgtccaagaaggttatggtaaaacagaaaatactattatacagtgtcagtta |
217 |
Q |
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| T |
10914513 |
tcgatgtatcagagggagagtgtccaggaaggttatggcaagacggaagatactatgatgcagtgtcagtta |
10914584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 10670260 - 10670186
Alignment:
| Q |
143 |
cagtcgatgtatcagagggagagtgtccaagaaggttatggtaaaacagaaaatactattatacagtgtcagtta |
217 |
Q |
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| T |
10670260 |
cagttgatgtatcagagggagagtgtccgggaaggttatggcaagatagaagatactatgatgcagtgtcagtta |
10670186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 10883899 - 10883825
Alignment:
| Q |
143 |
cagtcgatgtatcagagggagagtgtccaagaaggttatggtaaaacagaaaatactattatacagtgtcagtta |
217 |
Q |
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| T |
10883899 |
cagttgatgtatcagagggagagtgtccgggaaggttatggcaagatagaagatactatgatgcagtgtcagtta |
10883825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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