View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3598_low_22 (Length: 247)
Name: NF3598_low_22
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10065613 - 10065374
Alignment:
| Q |
1 |
cgaccgaactcaaggctggtgatttttgtggagaggagcttctaacatgggccttggatcctacaacctcttcaaacttacctatttcaactagtacagt |
100 |
Q |
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| T |
10065613 |
cgaccgaactcaaggctggtgatttttgtggagaggagcttctaacatgggccttggatcctacaacctcttcaaacttacctatttcaactagtacagt |
10065514 |
T |
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| Q |
101 |
tgaaactattacggaagttgaagcttttgctctaatgcatgatgacttgaagattgttgcttcccaatttcgacgtcttattaacagaaaacaactccaa |
200 |
Q |
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| T |
10065513 |
tgaaactattacggaagttgaagcttttgctctaatgcatgatgacttgaagattgttgcttcccaatttcgacgtcttattaacagaaaacaactccaa |
10065414 |
T |
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| Q |
201 |
cacactttcaggcaaggcttgatatgttttttcacctttg |
240 |
Q |
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| T |
10065413 |
cacactttcaggcaaggcttgatatgttttttcacctttg |
10065374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 48466297 - 48466506
Alignment:
| Q |
16 |
ctggtgatttttgtggagaggagcttctaacatgggccttggatcctacaacctcttcaaacttacctatttcaactagtacagttgaaactattacgga |
115 |
Q |
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| T |
48466297 |
ctggtgatttttgtggagaggaacttttaacatgggctttggatccaaactcctcctcgaatctacctacttcaactagaacagtagaaactatatcaga |
48466396 |
T |
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| Q |
116 |
agttgaagcttttgctctaatgcatgatgacttgaagattgttgcttcccaatttcgacgtcttattaacagaaaacaactccaacacactttcaggcaa |
215 |
Q |
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| T |
48466397 |
agttgaagcatttgcactcaaggctgatgacttgaagtttgttgcttcccaatttagacgtcttatcaacagcaaacaactccaacacactttcaggtat |
48466496 |
T |
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| Q |
216 |
ggcttgatat |
225 |
Q |
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| T |
48466497 |
ggcttgatat |
48466506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 41395772 - 41395825
Alignment:
| Q |
9 |
ctcaaggctggtgatttttgtggagaggagcttctaacatgggccttggatcct |
62 |
Q |
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| T |
41395772 |
ctcaaggctggtgacttctgtggagaggagcttctcacatgggcattagatcct |
41395825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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