View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3598_low_27 (Length: 236)
Name: NF3598_low_27
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 24318663 - 24318891
Alignment:
| Q |
1 |
gattactatttagacatagtgattgcagacactagagtcatatatgaattctctttaatccttggcatgaaattctttgcttaaggaggcctgctgcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24318663 |
gattactatttagacatagtgattgcagacaccagagtcatatatgaattctctctaatccttggcatgaaattctttgcttaaggaggcctgctgcttg |
24318762 |
T |
|
| Q |
101 |
atggtgaacaaagggaaactaccataagaacgtcaaagttatatgatgtgtttgttgtgacttactcagaatatgatgcaagtcaaatattcgaatgg-- |
198 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24318763 |
atggcgaacagagggaaactaccataagaacgtcaaagttatatgatgtgtttgttgtgacttactcagaatatgatgcaagtcaaatattcgaatggag |
24318862 |
T |
|
| Q |
199 |
----gtcaaaggagtggtagatgattatg |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
24318863 |
acttgtcaaaggagtggtagatgattatg |
24318891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University