View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3598_low_29 (Length: 230)
Name: NF3598_low_29
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_low_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 1900782 - 1900582
Alignment:
| Q |
17 |
cagaacctaatggataaaataacacaacaacgtttaataaatggaatctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcag |
116 |
Q |
| |
|
|||||||| | ||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||| ||| |
|
|
| T |
1900782 |
cagaaccttacggagaaaataacacaacaacacttaataaatggaatgtattatttacgaaaaaggaaaattacagaagaccagtactcctaccgcccag |
1900683 |
T |
|
| Q |
117 |
agctaagctcctccagtcctcctagataagagatgactctctaaagcccttccctctctcc--tttgctcaccctcaccgtcttattattaccttctcct |
214 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1900682 |
agctaagcttctccagtcctcctagataagagatgactctctaaagcccttccctctctcctttttgctcaccctcaccgtcttattattaccttctcct |
1900583 |
T |
|
| Q |
215 |
t |
215 |
Q |
| |
|
| |
|
|
| T |
1900582 |
t |
1900582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 1910228 - 1910028
Alignment:
| Q |
17 |
cagaacctaatggataaaataacacaacaacgtttaataaatggaatctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcag |
116 |
Q |
| |
|
|||||||| | ||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||| ||| |
|
|
| T |
1910228 |
cagaaccttacggagaaaataacacaacaacacttaataaatggaatgtattatttacgaaaaaggaaaattacagaagaccagtactcctaccgcccag |
1910129 |
T |
|
| Q |
117 |
agctaagctcctccagtcctcctagataagagatgactctctaaagcccttccctctctcc--tttgctcaccctcaccgtcttattattaccttctcct |
214 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1910128 |
agctaagcttctccagtcctcctagataagagatgactctctaaagcccttccctctctcctttttgctcaccctcaccgtcttattattaccttctcct |
1910029 |
T |
|
| Q |
215 |
t |
215 |
Q |
| |
|
| |
|
|
| T |
1910028 |
t |
1910028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 1893880 - 1893770
Alignment:
| Q |
17 |
cagaacctaatggataaaataacacaacaacgtttaataaatggaatctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcag |
116 |
Q |
| |
|
|||||||||| ||| ||||||||||| |||| |||||||||||||| ||| |||||||||||||||||||||| || |||||||||||| || ||| |
|
|
| T |
1893880 |
cagaacctaacggagaaaataacacagcaacacttaataaatggaatgtatcatttacgaaaaaggaaaattaccgttgaacggtactcctactgcccag |
1893781 |
T |
|
| Q |
117 |
agctaagctcc |
127 |
Q |
| |
|
||| ||||||| |
|
|
| T |
1893780 |
agcaaagctcc |
1893770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 1903326 - 1903216
Alignment:
| Q |
17 |
cagaacctaatggataaaataacacaacaacgtttaataaatggaatctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcag |
116 |
Q |
| |
|
|||||||||| ||| ||||||||||| |||| |||||||||||||| ||| |||||||||||||||||||||| || |||||||||||| || ||| |
|
|
| T |
1903326 |
cagaacctaacggagaaaataacacagcaacacttaataaatggaatgtatcatttacgaaaaaggaaaattaccgttgaacggtactcctactgcccag |
1903227 |
T |
|
| Q |
117 |
agctaagctcc |
127 |
Q |
| |
|
||| ||||||| |
|
|
| T |
1903226 |
agcaaagctcc |
1903216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 2934531 - 2934605
Alignment:
| Q |
55 |
aaatggaatctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcagagctaagctcctc |
129 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||| || |||||||||||| || ||||| ||||||||| |
|
|
| T |
2934531 |
aaatggaatgtattatttatgaaaaaggaaaattaccgttgaacggtactcctactgcccagaggaaagctcctc |
2934605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University