View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3598_low_3 (Length: 480)
Name: NF3598_low_3
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 7 - 463
Target Start/End: Original strand, 34792942 - 34793398
Alignment:
| Q |
7 |
tcgaagaatattgatgtcgaggtgacaatcacggtcttagatatttgaatataatttatcaatggannnnnnnnccatgaggagaaagggatagatagaa |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34792942 |
tcgaaaaatattgatgtcgaggtgacaatcacggtcctagatatttgaatataatttatcaatggattttttttccatgaggagaaagggatagatagaa |
34793041 |
T |
|
| Q |
107 |
aaaccattaagagtgcttttaagtcattttgtgtgagctcgaattctgtaagaccatcgttctgaagttgaaggagaatgtcaaggaaatctttcttctt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34793042 |
aaaccattaagagtgcttttaagtcattttgtgtgagctcgaattctgtaagaccatcgtcctgaagttgaaggagaatgtcaaggaaatctttcttctt |
34793141 |
T |
|
| Q |
207 |
agggtccctcctagacatcttatgctctacaattacacgatcaaggaaatcatccatttcttcagaagaatccttaannnnnnnnaattcggccagtgag |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
34793142 |
agggtccctcctagacatcttatgctctacaattacacgatcaaggaaatcatccatttcttcagaagaatccttaattttttttaatttggccagtgag |
34793241 |
T |
|
| Q |
307 |
aacatcaacccaacctaacataggaaacaaatctcccatactaaaatctaaaacttgagacgttatcttcctgccaagctctcccaatctgtaaccttca |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34793242 |
aacatcaacccaacctaacataggaaacaaatctcccatactaaaatctaaaacttgagacgttatcctcctgccaagctctcccaatctgtaaccttca |
34793341 |
T |
|
| Q |
407 |
tcgtcatatttccttccaaatatacacctacagatcatgttgtttgttgtttcaatc |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34793342 |
tcgtcatatttccttccaaatatacacctacagatcatcttgtttgttgtttcaatc |
34793398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 83 - 452
Target Start/End: Complemental strand, 34417396 - 34417029
Alignment:
| Q |
83 |
atgaggagaaagggatagatagaaaaaccattaagagtgcttttaagtcattttgtgtgagctcgaattctgtaagaccatcgttctgaagttgaaggag |
182 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| || || |||| | ||||||| | ||||||||||||||| |
|
|
| T |
34417396 |
atgatgagaaagggataga-agaaaaaccattaacagtgcttttaagtcattctgtgtgaggtctaactctgaacgaccatcatcctgaagttgaaggag |
34417298 |
T |
|
| Q |
183 |
aatgtcaaggaaatctttcttcttagggtccctcctagacatcttatgctctacaattacacgatcaaggaaatcatccatttcttcagaagaatcctta |
282 |
Q |
| |
|
|||||| |||||||||||||| || ||||||||| ||| |||||||||||| |||||||||| ||||| |||||||| |||||||||| ||| ||||| |
|
|
| T |
34417297 |
aatgtcgaggaaatctttcttgttggggtccctcgtagccatcttatgctcgacaattacactatcaaagaaatcattcatttcttcaaaagtggcctta |
34417198 |
T |
|
| Q |
283 |
annnnnnnnaattcggccagtgagaacatcaacccaacctaacataggaaacaaatctcccatactaaaatctaaaacttgagacgttatcttcctgcca |
382 |
Q |
| |
|
| |||| ||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |||||||||||||| | ||||| |||||||| |
|
|
| T |
34417197 |
a-aatttttaatttggccagtgagaacatcaacccaacccaacaaaggaaacaaatctcctatactaagatctaaaacttgagccattatcctcctgcca |
34417099 |
T |
|
| Q |
383 |
agctctcccaatctgtaaccttcatcgtcatatttccttccaaatatacacctacagatcatgttgtttg |
452 |
Q |
| |
|
|| ||||| |||||| |||| ||| | ||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34417098 |
agttctccaaatctgcaaccatcaccatcatacttccttccaaatatacacctacagattatgttgtttg |
34417029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University