View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3598_low_32 (Length: 226)
Name: NF3598_low_32
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_low_32 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 24318213 - 24318439
Alignment:
| Q |
1 |
caagcaaagagacaagaatctccgccagagttaaatgctttgcatcaagttctcaagcagtacaaggtaatcaagcctattaaggaaatggccgaacaaa |
100 |
Q |
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| T |
24318213 |
caagcaaagagacaagaatgtccgccagagttaaatgctttgcatcaagttctcaagcagtacaaggtaatcaagcctattaaggaaatggccgaacaaa |
24318312 |
T |
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| Q |
101 |
-cccatgctgcatcatgtttcttcaagaactcttgaaaaaacatgccgacctatctgaagaagaactcatatcactaaccagcgagtgtcatcatatgta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24318313 |
gcccatgctgcatcatgtttcttcaagaactcttgaaaaaacatgtcgacctatctgaagaagaactcatatcactaaccagcgagtgtcatcatacgta |
24318412 |
T |
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| Q |
200 |
tgaggtatcggctgaagtcaggtttga |
226 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
24318413 |
tgaggtattggctgaagtcaggtttga |
24318439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 24188124 - 24188239
Alignment:
| Q |
22 |
ccgccagagttaaatgctttgcatcaagttctcaagcagtacaaggtaatcaagcctattaaggaaatggccgaacaaa-cccatgctgcatcatgtttc |
120 |
Q |
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|||||||||||||||||||||||| || ||||||| |||||||||||||||| ||| |||||||||| | |||||||| |||||||||||||||||||| |
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| T |
24188124 |
ccgccagagttaaatgctttgcataaaattctcaaacagtacaaggtaatcatgcccattaaggaaacgatcgaacaaagcccatgctgcatcatgtttc |
24188223 |
T |
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| Q |
121 |
ttcaagaactcttgaa |
136 |
Q |
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| T |
24188224 |
ttcaagaactcttgaa |
24188239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 178
Target Start/End: Complemental strand, 17430597 - 17430467
Alignment:
| Q |
50 |
ttctcaagca-gtacaaggtaatcaagcctattaaggaaatggccgaacaaac-ccatgctgcatcatgtttcttcaagaactcttgaaaaaacatgccg |
147 |
Q |
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|||||||||| ||||| ||||||| ||| || |||||||||||||| |||| ||||||||||||| ||||||||||||||| ||||| | |||||| |
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| T |
17430597 |
ttctcaagcatgtacagagtaatcatgccgatcaaggaaatggccgatcaaagtccatgctgcatcaagtttcttcaagaactattgaagattaatgccg |
17430498 |
T |
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| Q |
148 |
acctatctgaagaagaactcatatcactaac |
178 |
Q |
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| T |
17430497 |
atctatccgaggaagaactcatatcactaac |
17430467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 16228336 - 16228227
Alignment:
| Q |
111 |
atcatgtttcttcaagaactcttgaaaaaacatgccgacctatctgaagaagaactcatatcactaaccagcgagtgtcatcatatgtatgaggtatcgg |
210 |
Q |
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|||| |||||||||||||| ||||| | |||| || ||||||||||||||||||||||||||||| || || |||||| | ||||| | | || ||| |
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| T |
16228336 |
atcaagtttcttcaagaacaattgaagaccaatgctgatctatctgaagaagaactcatatcactaactagagaatgtcataacatgtacgggttaccgg |
16228237 |
T |
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| Q |
211 |
ctgaagtcag |
220 |
Q |
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| T |
16228236 |
ctgaagtcag |
16228227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 3398972 - 3399096
Alignment:
| Q |
102 |
ccatgctgcatcatgtttcttcaagaactcttgaaaaaacatgccgacctatctgaagaagaactcatatcactaaccagcgagtgtcatcatatgtatg |
201 |
Q |
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||||||||||||| |||||||||||| ||||| || | | |||| | |||||||| |||||| |||| ||||| | ||||| | |||||| | ||| | |
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| T |
3398972 |
ccatgctgcatcaagtttcttcaagagctcttaaagacaaatgctaatctatctgaggaagaattcatctcactttctagcgaatttcatcacacgtacg |
3399071 |
T |
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| Q |
202 |
aggtatcggctgaagtcaggtttga |
226 |
Q |
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||||| |||||| |||||||||||| |
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| T |
3399072 |
aggtaccggctgtagtcaggtttga |
3399096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 24537223 - 24537175
Alignment:
| Q |
22 |
ccgccagagttaaatgctttgcatcaagttctcaagcagtacaaggtaa |
70 |
Q |
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||||||||||| |||| |||||||||| |||||||||||||||| |||| |
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| T |
24537223 |
ccgccagagttcaatgttttgcatcaaattctcaagcagtacaaagtaa |
24537175 |
T |
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