View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3598_low_4 (Length: 474)
Name: NF3598_low_4
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 20 - 461
Target Start/End: Complemental strand, 33026399 - 33025958
Alignment:
| Q |
20 |
tcaatctcgaacacaggtctcttctgattcacaatcttttgattctcaaactgtttttgcatgacagatggaaatgttcttgaaggggattgttctaatc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33026399 |
tcaatctcgaacacaggtctcttctgattcacaatcttttgattctcagactgtttttgcatgacagatggaaatgttcttgaaggggattgttctaatc |
33026300 |
T |
|
| Q |
120 |
ccatcaactttgcaacaagattggtacttttttccttccttggaaaagtcggtgaacacgaagaatcagaaagtttgtcataccaaacaacagatgattg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33026299 |
ccatcaactttgcaacaagattggtacttttttccttccttggaaaagtcggtgaacacgaagaatcagaaagtttgtcataccaaacaacagatgattg |
33026200 |
T |
|
| Q |
220 |
gcttgagcttgtagaagggaatgctgctgaagctgaatccaatccttcagaagtgcttgtgctttggaatagattttgtcgaaccaaactctccttaatc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33026199 |
gcttgagcttgtagaagggaatgctgctgaagctgaatccaatccttcagaagtacttgtgctttggaatagattttgtcgaaccaaactctccttaatc |
33026100 |
T |
|
| Q |
320 |
actttcttaagttcctctctacaactacttgaagaaccataagctgaattgtgttcaaaaaattgattagaatgtgttgatctatttccatcattcacat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33026099 |
actttcttaagttcctctctacaactacttgaagaaccataagctgaattgtgttcaaaaaattgattagaatgtgttgatctatttccatcattcacat |
33026000 |
T |
|
| Q |
420 |
gtgcatcaattttacttctttcatgtttctcctcttgtcttc |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33025999 |
gtgcatcaattttacttctttcatgtttctcctcttgtcttc |
33025958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University