View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3598_low_6 (Length: 440)
Name: NF3598_low_6
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 12417792 - 12417445
Alignment:
| Q |
18 |
acttctgaattgttgtgttttgtacttaatgtgctgcactcagactctacatcagaatctgaatatcttagattctgattaggatgttaaactaaagaaa |
117 |
Q |
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| T |
12417792 |
acttctgaattgttgtgttttgtacttaatgtgctgcactcagactctacatcagaatctgaatatcttagattctgattaggatgttaaactaaagaaa |
12417693 |
T |
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| Q |
118 |
agtaaagccacaaaaagcttccccccacgcccaatatttacttataagtcttacagtaacttattttttcttgcattatgatcttcttaaaaaatttatc |
217 |
Q |
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| T |
12417692 |
agtaaagccacaaaaagcttccccccacgcccaatatttacttataagtcttacagtaacttattttttcttgcattatgatcttcttaaaaaatttatc |
12417593 |
T |
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| Q |
218 |
gaggtgaatgttgtattggagaacaattttgaaattgttgatatgagtgaggaatcataagctaattcataaaaatgagaaaggtacataggcactttgt |
317 |
Q |
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| T |
12417592 |
gaggtgaatgttgtattggagaacaattttgaaattgttgatatgagtgacgaatcataagctaattcataaaaatgagaaaggtacataggcactttgt |
12417493 |
T |
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| Q |
318 |
aaggtgttaaatggtctacctttattttatgtgcataagggtgacatc |
365 |
Q |
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| T |
12417492 |
aaggtgttaaatggtctacctttattttatgtgtataagggtgacatc |
12417445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 419
Target Start/End: Complemental strand, 12417426 - 12417391
Alignment:
| Q |
384 |
tactgatacactgtcttttgcaatttatttggttgc |
419 |
Q |
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| T |
12417426 |
tactgatacactgtcttttgcaatttatttggttgc |
12417391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 13223967 - 13224031
Alignment:
| Q |
54 |
cactcagactctacatcagaatctgaatatcttagattctgattaggatgttaaactaaagaaaa |
118 |
Q |
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| T |
13223967 |
cactcagactctacatcagaatatgtatatcttagattctgatcaggctgttcaaccaaagaaaa |
13224031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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