View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3598_low_7 (Length: 427)
Name: NF3598_low_7
Description: NF3598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3598_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 1500830 - 1500547
Alignment:
| Q |
1 |
catgttcatcatcaaacaaaacaacaaacttcaaaacctactacaaatttcaccattaaagcttacatggagaatccaaactcattttcaaatgttgtta |
100 |
Q |
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| T |
1500830 |
catgttcatcatcaaacaaaacaacaaacttcaaaacctactacaaatttcaccattaaagcttacatggagaatccaaactcattttcaaatgttgtta |
1500731 |
T |
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| Q |
101 |
gcaaagttattggtgctcttcctgttgttggtcttttagctagaattatgagtgatgaaggtggtgttggtaatgatcttattgattttgctgagtttag |
200 |
Q |
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| T |
1500730 |
gcaaagttattggtgctcttcctgttgttggtcttttagctagaattatgagtgatgaaggtggtgttggtaatgatcttattgattttgctgagtttag |
1500631 |
T |
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| Q |
201 |
aagaagggttggtaagaattgtactgctactgattctactgctttttatcagtttcaagcaagaagaggaagggtaattattcg |
284 |
Q |
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| T |
1500630 |
aagaagggttggtaagaattgtactgctactgattctactgctttttatcagtttcaagcaagaagaggaagggtaattattcg |
1500547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 1500480 - 1500420
Alignment:
| Q |
351 |
gaggttaattccatgttcaaaatttttatctttttaatcttataatttgattaatgttgcat |
412 |
Q |
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| T |
1500480 |
gaggttaatttcatgttcaaaatttt-atctttttaatcttataatttgattaatgttgcat |
1500420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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