View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3599_high_13 (Length: 302)
Name: NF3599_high_13
Description: NF3599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3599_high_13 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 3165029 - 3165330
Alignment:
| Q |
1 |
catctttttcctcgttcttctcagcctcgaggtcttcaatctttgatttaagagacctgaaacatacaagtaaccacacttttatataattttaacaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3165029 |
catctttttcctcgttcttctcagcctcgaggtcttcaatctttgatttaagagacctgaaacatacaagtaaccacacttttatataattttaacaaga |
3165128 |
T |
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| Q |
101 |
atgtgttgaattataccgttcatcaaatgataaaatattatcatgtttatgtcattttctactcttattcaactctcttatcctatcgtgatgaaacaga |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
3165129 |
atgtgttgaattatacggttcatcaaatgataaaatattatcatgtttatgtcattttctactcctattcaactctcttaacctatcgtgatgaaacaga |
3165228 |
T |
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| Q |
201 |
cccaaaatgtccatacagcgcacgctacacattgtaaaaggatttacaagtgttagtttagagttcacagttctggtttttgggtttcgtttacaattac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3165229 |
cccaaaatgtccatacagcgcacgctacacattgtaaaaggatttacaagtgttagtttagagttcacagttctggtttttgggtttcgtttacaattac |
3165328 |
T |
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| Q |
301 |
ct |
302 |
Q |
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|| |
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| T |
3165329 |
ct |
3165330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 22844275 - 22844356
Alignment:
| Q |
1 |
catctttttcctcgttcttctcagcctcgaggtcttcaatctttgatttaagagacctgaaacatacaagtaaccacacttt |
82 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
22844275 |
catctttttcctcattcttctcagccttgaggtcttcaatctttgatttaaaagacctgaaacatacaagtaaccacgcttt |
22844356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 3164757 - 3164800
Alignment:
| Q |
5 |
tttttcctcgttcttctcagcctcgaggtcttcaatctttgatt |
48 |
Q |
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||||| |||||||||||||||||||||| |||||| |||||||| |
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| T |
3164757 |
ttttttctcgttcttctcagcctcgaggacttcaagctttgatt |
3164800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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