View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3599_high_14 (Length: 301)
Name: NF3599_high_14
Description: NF3599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3599_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 27324620 - 27324340
Alignment:
| Q |
13 |
aatatcaagttacacccaaattcaattaaaatttattcataataccaaaattatccttacttatttcctttccactcttatgaatgatacgtgattttaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |
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| T |
27324620 |
aatatcaagttacacccaaattcaattaaaatttattcataataccaaaattatccttactcatttccttcccactcttatgaatggtacgtgattttaa |
27324521 |
T |
|
| Q |
113 |
ttcacgttaggtaaattaagtatacgtgatctgaattcacgtgataaaacaactgcctcaaaatccacctgatacatgattc-----------gcatcta |
201 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
27324520 |
ttcacgttaggtaaattaagtatatgtgatctgaattcatgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcctgcatcta |
27324421 |
T |
|
| Q |
202 |
cactgtcttcacacagccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattggaaactat |
282 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27324420 |
cactgtcttcacacacccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattgggaactat |
27324340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 28359415 - 28359135
Alignment:
| Q |
13 |
aatatcaagttacacccaaattcaattaaaatttattcataataccaaaattatccttacttatttcctttccactcttatgaatgatacgtgattttaa |
112 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
28359415 |
aatatcaagttacacccaaattcatttaaaatttattcataatatcaaaattatccttactcatttccttcccactcttatgaatgatacgtgattttaa |
28359316 |
T |
|
| Q |
113 |
ttcacgttaggtaaattaagtatacgtgatctgaattcacgtgataaaacaactgcctcaaaatccacctgatacatgattc-----------gcatcta |
201 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
28359315 |
ttcacgttaggtaaattaagtatatgtgatctgaattcacgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcctgcatcta |
28359216 |
T |
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| Q |
202 |
cactgtcttcacacagccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattggaaactat |
282 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28359215 |
cattgtcttcacacacccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattgggaactat |
28359135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 3500854 - 3500579
Alignment:
| Q |
13 |
aatatcaagttacacccaaattcaattaaaatttattcataataccaaaattatccttacttatttcctttccactcttatgaatgatacgtgattttaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |
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| T |
3500854 |
aatatcaagttacacccaaattcaattaaaatttattcataataacaaaattatccttactcatttccttcccactcttatgaatgatacatgattttaa |
3500755 |
T |
|
| Q |
113 |
ttcacgttaggtaaattaagtatacgtgatctgaattcacgtgataaaacaactgcctcaaaatc---cacctgatacatgattc-----------gcat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |
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| T |
3500754 |
ttcacgttaggtaaattaagtatacgtgatctgaattcacgtgataaaacaacaacctcaaaatccaccacctgatacatgattcatttgttgcctgcat |
3500655 |
T |
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| Q |
199 |
ctacactgtcttcacacagccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattg |
274 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3500654 |
ctacactgtcttcacacaaccatggatgatgatttccaccaaccaacaatatgaactatcatggaggatgcaattg |
3500579 |
T |
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