View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3599_high_19 (Length: 257)
Name: NF3599_high_19
Description: NF3599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3599_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 11621742 - 11621527
Alignment:
| Q |
7 |
gaagcaaaggtaacaattgaacataaacaaagatgcaagaccatnnnnnnnnttcataaaaactcacacaaaattattggaacttaaacctgaaaatgat |
106 |
Q |
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| T |
11621742 |
gaagcaaagataacaattgaacacaaacaaagatgcaagaccataaaaaaa-ttcataaaaactcacacaaaattattggaacttaaacctgaaaatgat |
11621644 |
T |
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| Q |
107 |
aatgatggagtgaccaaaacatagattat---atatcaatcttaaaaatttgatatataaaaaacacaactcttctagcagtaaatcatcttccaataaa |
203 |
Q |
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| T |
11621643 |
aatgatggagtgaccaaaacatagattattatatatcaatcttaaaaatttgatatataaaaaacacaactcttctagcagtaaatcatcttcaaataaa |
11621544 |
T |
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| Q |
204 |
cacgactcttcttatac |
220 |
Q |
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||| ||| ||||||||| |
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| T |
11621543 |
cacaacttttcttatac |
11621527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 65 - 220
Target Start/End: Original strand, 47837694 - 47837843
Alignment:
| Q |
65 |
aaaactcacacaaaattattggaacttaaacctgaaaatgataatgatggagtgaccaaaacatagattatatatcaatcttaaaaatttgatatataaa |
164 |
Q |
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| T |
47837694 |
aaaactcacacacaattattagaactcaaacctaaaaatg------atggagtgtccaaaatatagattatatatcaaacttaaaaatttgatatataaa |
47837787 |
T |
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| Q |
165 |
aaacacaactcttctagcagtaaatcatcttccaataaacacgactcttcttatac |
220 |
Q |
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| T |
47837788 |
aaacacaactcttctatcgataattcatctttcaataaacacaactcttcttatac |
47837843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 16758722 - 16758823
Alignment:
| Q |
119 |
accaaaacatagattatatatcaatcttaaaaatttgatatataaaaaacacaactcttctagcagtaaatcatcttccaataaacacgactcttcttat |
218 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||| ||||| |||||||| ||||||||| ||||||| ||| |
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| T |
16758722 |
accaaaacatagattatatatcaacttaaaaaatttgatatataaaaaacataactcttctatgagtaattcatcttctaataaacacaactcttcctat |
16758821 |
T |
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| Q |
219 |
ac |
220 |
Q |
| |
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|| |
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| T |
16758822 |
ac |
16758823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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