View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3599_high_2 (Length: 453)

Name: NF3599_high_2
Description: NF3599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3599_high_2
NF3599_high_2
[»] chr4 (10 HSPs)
chr4 (18-394)||(35098037-35098417)
chr4 (108-441)||(35097701-35098034)
chr4 (138-441)||(35072678-35072981)
chr4 (137-441)||(35106879-35107183)
chr4 (136-441)||(36296449-36296754)
chr4 (143-437)||(36940478-36940772)
chr4 (145-389)||(36961300-36961545)
chr4 (142-257)||(36935859-36935975)
chr4 (337-441)||(36935974-36936078)
chr4 (219-265)||(36953720-36953766)
[»] chr6 (2 HSPs)
chr6 (138-441)||(24014177-24014480)
chr6 (137-441)||(24040733-24041037)
[»] chr1 (1 HSPs)
chr1 (308-440)||(3123093-3123225)
[»] chr5 (2 HSPs)
chr5 (144-287)||(34919131-34919274)
chr5 (318-427)||(26578990-26579099)


Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Complemental strand, 35098417 - 35098037
Alignment:
Q  18 ttcacatatgacatgataactcac----acccacatcacacacaaaaggtaagcattacaaccaacactctcaaggacgcaaataatttttaagcaacat 113  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  35098417 ttcacatatgacatgataactcactcacacccacatcacacacaaaaggtaagcattacaaccaacactctgaaggacgcgaataatttttaagcaacat 35098318  T
Q  114 aataacagacagaactcattataagttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35098317 aataacagacagaactcattataagttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacac 35098218  T
Q  214 cattctccattgcagctttcacttggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35098217 cattctccattgcagctttcacttggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattg 35098118  T
Q  314 atcgttcttatcttctttctcaacattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttc 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35098117 atcgttcttatcttctttctcaacattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttc 35098037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 108 - 441
Target Start/End: Complemental strand, 35098034 - 35097701
Alignment:
Q  108 caacataataacagacagaactcattataagttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35098034 caacataataacagacagaactcattataagttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtga 35097935  T
Q  208 gaacaccattctccattgcagctttcacttggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35097934 gaacaccattctccattgcagctttcacttggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatg 35097835  T
Q  308 ccattgatcgttcttatcttctttctcaacattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35097834 ccattgatcgttcttatcttctttctcaacattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcttccttcttcagt 35097735  T
Q  408 ccaggaagatcagccttgaacacatgtgcttctg 441  Q
    |||||||||||||||| |||||||||||||||||    
T  35097734 ccaggaagatcagcctcgaacacatgtgcttctg 35097701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 138 - 441
Target Start/End: Original strand, 35072678 - 35072981
Alignment:
Q  138 gttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcactt 237  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35072678 gttcaaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcactt 35072777  T
Q  238 ggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaac 337  Q
    | ||||||||||||||||| ||  |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||     
T  35072778 gatccattttcgcattctctggttatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaat 35072877  T
Q  338 attcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgct 437  Q
     |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35072878 gttcctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagct 35072977  T
Q  438 tctg 441  Q
    ||||    
T  35072978 tctg 35072981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 137 - 441
Target Start/End: Complemental strand, 35107183 - 35106879
Alignment:
Q  137 agttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcact 236  Q
    |||| ||||||||||||||||||  || || |||||||||||||||||||| || || ||||| |||| |||||||||||||||||| ||||||||||||    
T  35107183 agtttaaccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagcgagaacaccattctccatagcagctttcact 35107084  T
Q  237 tggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaa 336  Q
    || ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  35107083 tgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaa 35106984  T
Q  337 cattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgc 436  Q
      |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  35106983 agttcctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagc 35106884  T
Q  437 ttctg 441  Q
    |||||    
T  35106883 ttctg 35106879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 136 - 441
Target Start/End: Original strand, 36296449 - 36296754
Alignment:
Q  136 aagttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcac 235  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| |  ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36296449 aagttcaaccagagatctcaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccattgcagctttcac 36296548  T
Q  236 ttggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctca 335  Q
     || ||||| || ||||| || |||||||||||||||||||| || || ||||||||||||||||| ||||||||||| | |||||| ||||||||||||    
T  36296549 ctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccattggttgttcttgtcttctttctca 36296648  T
Q  336 acattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtg 435  Q
    || ||||||||||| || ||||||||||| || ||| |||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||    
T  36296649 acgttcctctctccactaatctgaagaactctgtcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagctttaaacacgtgtg 36296748  T
Q  436 cttctg 441  Q
    ||||||    
T  36296749 cttctg 36296754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 143 - 437
Target Start/End: Original strand, 36940478 - 36940772
Alignment:
Q  143 accagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtcc 242  Q
    ||||||||| |||||||  ||||| ||| | ||||||||||||| ||| || ||||| ||||||||||  |||||||||||||||||||||| ||| |||    
T  36940478 accagagatatcaatggttttaacttcatgattcttgatctcttttttaggcacagtgacagtgagaatgccattctccattgcagctttcatttgatcc 36940577  T
Q  243 attttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattcc 342  Q
    ||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  | |    
T  36940578 attttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttcttatcttctttctcaacgcttc 36940677  T
Q  343 tctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgct 437  Q
    | | ||| ||||||||||||||||||||| ||||||| || || ||| ||||||||||||||| ||| |||| |||||| |||||||| ||||||    
T  36940678 tttttccacttatctgaagaaccctatcatcttcaatctctactttcgcttcctccttcttcattcctggaaaatcagcattgaacacgtgtgct 36940772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 145 - 389
Target Start/End: Complemental strand, 36961545 - 36961300
Alignment:
Q  145 cagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgca-gctttcacttggtcca 243  Q
    ||||||| ||||||| ||||||  |||| || || |  ||||| || |||| ||| |||||||||||||||||||||  ||   || ||||| || ||||    
T  36961545 cagagatatcaatggtcttaactccaggttttttcacttcttccttaggaatagttacagtgagaacaccattctcccatgtttgcattcacctgatcca 36961446  T
Q  244 ttttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattcct 343  Q
    | || |||||||| | |||||| ||| ||||||||||||||||||||||| ||||||| | |||||||| || |||||||||||||||||||||  | ||    
T  36961445 tcttagcattctctgccaatctaaacttcctcatgaatttcccactgctaagctccacgcaatgccattcattgttcttatcttctttctcaacgcttct 36961346  T
Q  344 ctctccgcttatctgaagaaccctatcaccttcaatttcaaccttc 389  Q
    ||||||||| |||||||||||||||||| ||||||| || ||||||    
T  36961345 ctctccgctgatctgaagaaccctatcaacttcaatctctaccttc 36961300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 142 - 257
Target Start/End: Original strand, 36935859 - 36935975
Alignment:
Q  142 aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctcc-attgcagctttcacttggt 240  Q
    |||||||||| ||||||| ||| || ||||||||||| | |||||||| ||| || |||||||||||||||||||||||| ||||||||||||||||| |    
T  36935859 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctccaattgcagctttcacttgat 36935958  T
Q  241 ccattttcgcattctca 257  Q
    ||||||| |||||||||    
T  36935959 ccattttagcattctca 36935975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 337 - 441
Target Start/End: Original strand, 36935974 - 36936078
Alignment:
Q  337 cattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgc 436  Q
    |||| |||||||||||||||||||||||| ||||| ||||||| || || ||||||||||||||||||| ||| |||||||| ||||||||||||| | |    
T  36935974 catttctctctccgcttatctgaagaaccatatcatcttcaatctctactttcacttcctccttcttcattcctggaagatccgccttgaacacatctac 36936073  T
Q  437 ttctg 441  Q
    |||||    
T  36936074 ttctg 36936078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 36953720 - 36953766
Alignment:
Q  219 tccattgcagctttcacttggtccattttcgcattctcaggcaatct 265  Q
    |||||||||||||||||||| ||| |||| ||||| |||||||||||    
T  36953720 tccattgcagctttcacttgatccgttttagcattgtcaggcaatct 36953766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 138 - 441
Target Start/End: Original strand, 24014177 - 24014480
Alignment:
Q  138 gttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcactt 237  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24014177 gttcaaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcactt 24014276  T
Q  238 ggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaac 337  Q
    | |||||||||||||| || ||||| ||||| ||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24014277 gatccattttcgcattttcgggcaacctgaatctcctcatgaactttccgctgctgcgctccacacgatgccattgatcgttcttatcttctttctcaac 24014376  T
Q  338 attcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgct 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24014377 attcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgct 24014476  T
Q  438 tctg 441  Q
    ||||    
T  24014477 tctg 24014480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 137 - 441
Target Start/End: Original strand, 24040733 - 24041037
Alignment:
Q  137 agttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcact 236  Q
    |||| |||||||||| ||||||| ||| || | ||||||||| |  ||||| || || ||||| |||||||||| |||||||||||||||||||||||||    
T  24040733 agtttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaataccattctccattgcagctttcact 24040832  T
Q  237 tggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaa 336  Q
    || ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  24040833 tgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaa 24040932  T
Q  337 cattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgc 436  Q
    | |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24040933 cgttcctctcaccgcttatctgaagaaccctatcatcttcaatttcaaccttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgc 24041032  T
Q  437 ttctg 441  Q
    |||||    
T  24041033 ttctg 24041037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 308 - 440
Target Start/End: Complemental strand, 3123225 - 3123093
Alignment:
Q  308 ccattgatcgttcttatcttctttctcaacattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagt 407  Q
    |||| |||||||||| ||||||||||||||  |||| ||||||||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||      
T  3123225 ccatcgatcgttcttgtcttctttctcaacggtcctttctccgcttatctgaagaaccttatcatcttcaatttcaaccttcacctcttccttcttcaac 3123126  T
Q  408 ccaggaagatcagccttgaacacatgtgcttct 440  Q
    || ||||||||||| ||||||||||||||||||    
T  3123125 cctggaagatcagctttgaacacatgtgcttct 3123093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 144 - 287
Target Start/End: Complemental strand, 34919274 - 34919131
Alignment:
Q  144 ccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtcca 243  Q
    ||||| |||||||| |||||||| |||  ||||||    ||||| || |||||||||||||| ||||| |||||||||||  ||||||| || || ||||    
T  34919274 ccagaaatttcaatagacttaacctcactcttcttctcttcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatcca 34919175  T
Q  244 ttttcgcattctcaggcaatctgaacctcctcatgaatttccca 287  Q
    ||||  ||||||||||||| || ||||||||||| || ||||||    
T  34919174 ttttaacattctcaggcaacctaaacctcctcataaacttccca 34919131  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 427
Target Start/End: Complemental strand, 26579099 - 26578990
Alignment:
Q  318 ttcttatcttctttctcaacattcctctctccgcttatctgaagaaccctatcaccttcaatttcaaccttcacttcctccttcttcagtccaggaagat 417  Q
    ||||| ||||| |||||||  ||||||||||| |||||||  | ||| | |||  ||||||| |||||||||||||||||||||||||  || |||||||    
T  26579099 ttcttgtcttccttctcaattttcctctctccacttatcttcaaaacacgatcctcttcaatctcaaccttcacttcctccttcttcacgccgggaagat 26579000  T
Q  418 cagccttgaa 427  Q
    | || |||||    
T  26578999 cggctttgaa 26578990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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