View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3599_high_8 (Length: 319)

Name: NF3599_high_8
Description: NF3599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3599_high_8
NF3599_high_8
[»] chr6 (7 HSPs)
chr6 (156-228)||(173493-173565)
chr6 (156-218)||(15717444-15717506)
chr6 (156-218)||(17199391-17199453)
chr6 (157-218)||(17199287-17199348)
chr6 (156-218)||(17199600-17199662)
chr6 (169-216)||(30260262-30260309)
chr6 (169-205)||(31153935-31153971)
[»] chr3 (9 HSPs)
chr3 (156-228)||(31903345-31903417)
chr3 (156-218)||(36591110-36591172)
chr3 (156-228)||(33543338-33543410)
chr3 (160-204)||(11235498-11235542)
chr3 (156-218)||(33544262-33544324)
chr3 (160-218)||(36589998-36590056)
chr3 (171-218)||(30162292-30162339)
chr3 (172-218)||(35343379-35343425)
chr3 (169-205)||(21170747-21170783)
[»] chr2 (3 HSPs)
chr2 (1-58)||(40878533-40878590)
chr2 (156-205)||(13587407-13587456)
chr2 (156-205)||(13588099-13588148)
[»] chr7 (10 HSPs)
chr7 (156-228)||(25965535-25965607)
chr7 (156-218)||(25964493-25964555)
chr7 (156-218)||(33161765-33161827)
chr7 (156-228)||(34237819-34237885)
chr7 (156-218)||(34239255-34239317)
chr7 (156-205)||(26403782-26403831)
chr7 (169-205)||(43655455-43655491)
chr7 (169-205)||(28346596-28346632)
chr7 (169-205)||(40754840-40754876)
chr7 (169-205)||(40756970-40757006)
[»] chr8 (5 HSPs)
chr8 (156-218)||(13904207-13904269)
chr8 (156-218)||(13907242-13907304)
chr8 (156-218)||(11918694-11918756)
chr8 (169-205)||(7780205-7780241)
chr8 (169-205)||(7827171-7827207)
[»] chr5 (7 HSPs)
chr5 (174-228)||(7672328-7672382)
chr5 (156-218)||(11785495-11785557)
chr5 (169-205)||(41555195-41555231)
chr5 (169-205)||(5625459-5625495)
chr5 (169-205)||(20875079-20875115)
chr5 (169-205)||(25062297-25062333)
chr5 (169-205)||(27822780-27822816)
[»] chr4 (2 HSPs)
chr4 (156-218)||(35012006-35012068)
chr4 (160-217)||(13210593-13210650)
[»] chr1 (2 HSPs)
chr1 (156-218)||(34660652-34660714)
chr1 (156-218)||(34661731-34661793)
[»] scaffold0360 (2 HSPs)
scaffold0360 (169-205)||(7658-7694)
scaffold0360 (169-205)||(10681-10717)


Alignment Details
Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 173493 - 173565
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 228  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  173493 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtccgacacgtgtcacgatctgacag 173565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 15717506 - 15717444
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  15717506 gtccttttgtgcgttcccgccatttgaaacggcgggactagccgccggtctgacacgtgtcac 15717444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 17199391 - 17199453
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  17199391 gtccttttgtgcgttcccgccatttgaaacggcgggactagccgccggtctgacacgtgtcac 17199453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 17199287 - 17199348
Alignment:
Q  157 tccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||  |||||||||||    
T  17199287 tccttttgtgcgttcccgccatttgaaacggcgggactagccgccggtctgacacgtgtcac 17199348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 17199662 - 17199600
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| ||||  |||||||||||    
T  17199662 gtccttttgtgcgttcctgccatttgaaacggcgggactggccgctggtctgacacgtgtcac 17199600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 30260262 - 30260309
Alignment:
Q  169 ttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtc 216  Q
    |||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  30260262 ttcccgccatttgaaacggcgggattggccgccggtctaacacatgtc 30260309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 31153935 - 31153971
Alignment:
Q  169 ttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    |||||||||||||||||||||| ||||||||||||||    
T  31153935 ttcccgccatttgaaacggcggaactggccgccggtc 31153971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 31903417 - 31903345
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 228  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  31903417 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtccgacacgtgtcacgatctgacag 31903345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 36591172 - 36591110
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||    
T  36591172 gtccttttgtgcgttcccgccatttgaaacggcgggactggccgccggtctgacacgtgtcac 36591110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 33543338 - 33543410
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 228  Q
    |||||||||||| |||||||  ||| ||| ||||||||||||||||||||| |||||||||||||||||||||    
T  33543338 gtccttttgtgcgttcccgctgttttaaatggcgggactggccgccggtccgacacgtgtcacgatctgacag 33543410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 11235498 - 11235542
Alignment:
Q  160 ttttgtgctttcccgccatttgaaacggcgggactggccgccggt 204  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  11235498 ttttgtgcgttcccgccatttgaaacggcgggactggccgccggt 11235542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 33544324 - 33544262
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    |||||||||||| |||||||| ||||||| ||||||||||||| ||||||  |||||||||||    
T  33544324 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccaccggtctgacacgtgtcac 33544262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 36589998 - 36590056
Alignment:
Q  160 ttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    |||||||| |||||||||||||||||||||||||| |||| |||||  |||||||||||    
T  36589998 ttttgtgcgttcccgccatttgaaacggcgggactagccgtcggtctgacacgtgtcac 36590056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 30162292 - 30162339
Alignment:
Q  171 cccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    |||||||||||||||||||||||||||||||  ||  |||||||||||    
T  30162292 cccgccatttgaaacggcgggactggccgccaatctgacacgtgtcac 30162339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 35343379 - 35343425
Alignment:
Q  172 ccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    ||||||||||||||| ||||||||||||||||||  |||| ||||||    
T  35343379 ccgccatttgaaacgacgggactggccgccggtctgacacatgtcac 35343425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 21170747 - 21170783
Alignment:
Q  169 ttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  21170747 ttcccgccatctgaaatggcgggactggccgccggtc 21170783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 40878590 - 40878533
Alignment:
Q  1 atgtgttggtgctgtggcgtcgtactctagacacatcttcattataaagtgttagtgc 58  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40878590 atgtgttggtgctgtggcgtcgtactctagacacagcttcattataaagtgttagtgc 40878533  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 13587407 - 13587456
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    ||||||| | || |||||||||| ||||||||||||||||||||||||||    
T  13587407 gtcctttagcgcgttcccgccatctgaaacggcgggactggccgccggtc 13587456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 13588148 - 13588099
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    ||||||| | || |||||||||| |||||||| |||||||||||||||||    
T  13588148 gtcctttagcgcgttcccgccatctgaaacggtgggactggccgccggtc 13588099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 25965607 - 25965535
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 228  Q
    |||||||||||| |||||||||||||||||||||||||||| || |||| | |||||||||||||| ||||||    
T  25965607 gtccttttgtgcgttcccgccatttgaaacggcgggactggtcgacggttcgacacgtgtcacgatgtgacag 25965535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 25964493 - 25964555
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||||  |||||||||||    
T  25964493 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtctgacacgtgtcac 25964555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 33161827 - 33161765
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||||  |||||||||||    
T  33161827 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtctgacacgtgtcac 33161765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 34237819 - 34237885
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 228  Q
    |||||||||||| ||||||||||||||||||||      |||||||||||| |||||||||||||||||||||    
T  34237819 gtccttttgtgcgttcccgccatttgaaacggc------ggccgccggtccgacacgtgtcacgatctgacag 34237885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 34239317 - 34239255
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    |||||||||||| |||||||| ||||||| |||||||||||||||||||   |||||||||||    
T  34239317 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtttgacacgtgtcac 34239255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 26403782 - 26403831
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    |||||||||||| |||||||||| ||||||||| ||||||||||||||||    
T  26403782 gtccttttgtgcgttcccgccatctgaaacggcaggactggccgccggtc 26403831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 43655491 - 43655455
Alignment:
Q  169 ttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    |||||||||| ||||||||||||||||||||||||||    
T  43655491 ttcccgccatctgaaacggcgggactggccgccggtc 43655455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 28346596 - 28346632
Alignment:
Q  169 ttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  28346596 ttcccgccatctgaaatggcgggactggccgccggtc 28346632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 40754840 - 40754876
Alignment:
Q  169 ttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  40754840 ttcccgccatctgaaatggcgggactggccgccggtc 40754876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 40757006 - 40756970
Alignment:
Q  169 ttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  40757006 ttcccgccatctgaaatggcgggactggccgccggtc 40756970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 13904207 - 13904269
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||  |||||||||||    
T  13904207 gtccttttgtgcgttcccgccatttgaaacggcggaactggccgccggtctgacacgtgtcac 13904269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 13907304 - 13907242
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||||  |||||||||||    
T  13907304 gtccttttgtgcgttcccgccctttgaaagggcgggactggccgccggtctgacacgtgtcac 13907242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 11918694 - 11918756
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    ||||||| | || ||||||||||||||||||||||||||| |||||||||  |||| ||||||    
T  11918694 gtcctttagcgcgttcccgccatttgaaacggcgggactgaccgccggtctgacacatgtcac 11918756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 7780205 - 7780241
Alignment:
Q  169 ttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  7780205 ttcccgccatctgaaatggcgggactggccgccggtc 7780241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 7827171 - 7827207
Alignment:
Q  169 ttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  7827171 ttcccgccatctgaaatggcgggactggccgccggtc 7827207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 7672382 - 7672328
Alignment:
Q  174 gccatttgaaacggcgggactggccgccggtccaacacgtgtcacgatctgacag 228  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  7672382 gccatttgaaacggcaggactggccgccggtccgacacgtgtcacgatctgacag 7672328  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 11785557 - 11785495
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    |||||||| ||| |||||||| ||||||| ||||||| ||||||||||||  |||||||||||    
T  11785557 gtccttttctgcgttcccgccgtttgaaatggcgggattggccgccggtctgacacgtgtcac 11785495  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 41555195 - 41555231
Alignment:
Q  169 ttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    |||||||||| ||||||||||||||||||||||||||    
T  41555195 ttcccgccatctgaaacggcgggactggccgccggtc 41555231  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 5625459 - 5625495
Alignment:
Q  169 ttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  5625459 ttcccgccatctgaaatggcgggactggccgccggtc 5625495  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 20875079 - 20875115
Alignment:
Q  169 ttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  20875079 ttcccgccatctgaaatggcgggactggccgccggtc 20875115  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 25062333 - 25062297
Alignment:
Q  169 ttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  25062333 ttcccgccatctgaaatggcgggactggccgccggtc 25062297  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 27822816 - 27822780
Alignment:
Q  169 ttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  27822816 ttcccgccatctgaaatggcgggactggccgccggtc 27822780  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 35012006 - 35012068
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||||  |||||||||||    
T  35012006 gtccttttgtgcgttcccgccgtttgaaatggcgggactggccgccggtcggacacgtgtcac 35012068  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 13210650 - 13210593
Alignment:
Q  160 ttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtca 217  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  13210650 ttttgtgcgttcccgccatttgaaacggcgggactgaccgccggtctgacacgtgtca 13210593  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 34660652 - 34660714
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    ||||||| | || |||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  34660652 gtcctttagcgcgttcccgccatttgaaacggcgggactggccgccggtctgacacatgtcac 34660714  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 34661793 - 34661731
Alignment:
Q  156 gtccttttgtgctttcccgccatttgaaacggcgggactggccgccggtccaacacgtgtcac 218  Q
    ||||||| | || |||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  34661793 gtcctttagcgcgttcccgccatttgaaacggcgggactggccgccggtctgacacatgtcac 34661731  T

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Target: scaffold0360 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 7658 - 7694
Alignment:
Q  169 ttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  7658 ttcccgccatctgaaatggcgggactggccgccggtc 7694  T

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Target: scaffold0360; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 10717 - 10681
Alignment:
Q  169 ttcccgccatttgaaacggcgggactggccgccggtc 205  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  10717 ttcccgccatctgaaatggcgggactggccgccggtc 10681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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