View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3599_high_9 (Length: 316)
Name: NF3599_high_9
Description: NF3599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3599_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 55824850 - 55825138
Alignment:
| Q |
18 |
aattactgcttataataagtgatctttcagtgcaaggagtcttcttttcttccaacggaaaggcagaaagccaacgcaagaactaatcattctgttttct |
117 |
Q |
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| T |
55824850 |
aattactgcttataataagtgatctttcagtgcaaggagtcttcttttcttccaacggaaaggcagaaagccaacgcaagaaccaatcattctgttttct |
55824949 |
T |
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| Q |
118 |
ttcccatttagcttttgaatctctgctttcagttctagatgctcaacatcgaagaattatctgaacaatttgatatcggtgaagatgtactatcaggttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55824950 |
ttcccatttagcttttgaatctctgctttcagttctagatgctcaacatcgaagaattatctgaacaatttgatatcggtgaagatgtactatcaggttg |
55825049 |
T |
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| Q |
218 |
acgacatctccttaattcacgttcaattgccacttttgcagaattttccatctctgcataccacaaagccgtctccattgcagcctttg |
306 |
Q |
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| T |
55825050 |
acgacatctccttaattcacgttcaattgccacttttgcagaattttccatctctgcataccacaaagccgtctccattgcagcctttg |
55825138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 56150131 - 56149843
Alignment:
| Q |
18 |
aattactgcttataataagtgatctttcagtgcaaggagtcttcttttcttccaacggaaaggcagaaagccaacgcaagaactaatcattctgttttct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
56150131 |
aattactgcttataataagtgatctttcagtgcaaggagtcttcttttcttccaacggaaaggcagaaagccaacgcaagaaccaatcattctgttttct |
56150032 |
T |
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| Q |
118 |
ttcccatttagcttttgaatctctgctttcagttctagatgctcaacatcgaagaattatctgaacaatttgatatcggtgaagatgtactatcaggttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56150031 |
ttcccatttagcttttgaatctctgctttcagttctagatgctcaacatcgaagaattatctgaacaatttgatatcggtgaagatgtactatcaggttg |
56149932 |
T |
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| Q |
218 |
acgacatctccttaattcacgttcaattgccacttttgcagaattttccatctctgcataccacaaagccgtctccattgcagcctttg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149931 |
acgacatctccttaattcacgttcaattgccacttttgcagaatttgccatctctgcataccacaaagccgtctccattgcagcctttg |
56149843 |
T |
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