View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3599_low_1 (Length: 709)
Name: NF3599_low_1
Description: NF3599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3599_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 80 - 693
Target Start/End: Original strand, 44019087 - 44019703
Alignment:
| Q |
80 |
ggacgtgtatttaagaaccgaagtagttactttctgcaccctataatcatgactaatcttccatgttggaaattcaagagctaataataaatcatttttg |
179 |
Q |
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| T |
44019087 |
ggacgtgtatttaagaaccgaagtagttactttctgcaccctataatcatgactaatcttccatgttggaaattcaagagctaataataaatcatttttg |
44019186 |
T |
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| Q |
180 |
gtaagacaatcaagtccttggaatatgtaataatgacaccggcaatgtaagggagtttattatagttgtacttaagttgaggtataataaggtggcaatt |
279 |
Q |
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| T |
44019187 |
gtaagacaatcaagtccttggaatatgtaataatgacaccggcaatgtaagggagtttattatagttgtacttaagttgaggtataataaggtggcaatt |
44019286 |
T |
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| Q |
280 |
tggaaatgtacatgagagttaaagtgaaatct-gatcgtggattcaaataggttaagagttcaactcttgtatcttattgtttcataaatttgtgcaaag |
378 |
Q |
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| T |
44019287 |
tggaaatgtacatgagagttaaagtgaaacagagatcgtggattcaaataggttaagatttcaactcttgtattttattgtttcataaatttgtgcaaag |
44019386 |
T |
|
| Q |
379 |
gagaataagttgttgagacacgtagtcttgaataacaactctcaactgtg--ctcgggtggccatggagctgcaaataatttatgagagtattttattag |
476 |
Q |
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| T |
44019387 |
gagaataagttgttgagacacgtagtcttgaataacaactctcaactgtgtgctcgggtggccatggagctgcaaataatttatgagagtattttattag |
44019486 |
T |
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| Q |
477 |
agcatttggagtgctattttaaattggctaggaattttccgtgtgtttgccagatgatcttcataatcatgctactcaatttgtggactcctattaaagt |
576 |
Q |
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| T |
44019487 |
agcatttggagtgctattttaaattggctaggaattttccgtgtgtttgccagatgatcttcataatcatgctactcaatttgtggactcctattaaagt |
44019586 |
T |
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| Q |
577 |
ctaggtgccgatagaaagactttctggttaacgtgcatcaaatttggaaacatcataatgttagacttttttgaacaaaatctctagatctttttaattt |
676 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44019587 |
ctaggtgccgatagaaagactttctggttaacgtgcatcaaatttggaaacatcataatgttagacttttttgaacaaaatctctagatctttttaattt |
44019686 |
T |
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| Q |
677 |
gcatatcaggtattatg |
693 |
Q |
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| T |
44019687 |
gcatatcaggtattatg |
44019703 |
T |
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