View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3599_low_11 (Length: 310)
Name: NF3599_low_11
Description: NF3599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3599_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 55825139 - 55825440
Alignment:
| Q |
1 |
tttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtacattccttgcaactcagccatgataactgcctctttctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825139 |
tttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtacattccttgcaactcagccatgataactgcctctttctt |
55825238 |
T |
|
| Q |
101 |
ttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaattttgaaatcgagagtcta |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825239 |
ttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaattttgaaatcgagagtcta |
55825338 |
T |
|
| Q |
201 |
ctttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgcttttgctgctttagcctcttccaaaacaagttctagctttttctctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825339 |
ctttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgcttttgctgctttagcctcttccaaaacaagttctagctttttctctg |
55825438 |
T |
|
| Q |
301 |
ct |
302 |
Q |
| |
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|| |
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| T |
55825439 |
ct |
55825440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 56149842 - 56149541
Alignment:
| Q |
1 |
tttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtacattccttgcaactcagccatgataactgcctctttctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149842 |
tttcctcaacagatttcaggttagcttccacctttatgtctaattcatttttccttgtgtacattccttgcaactcagccatgataactgcctctttctt |
56149743 |
T |
|
| Q |
101 |
ttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaattttgaaatcgagagtcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149742 |
ttctgccaattcttggtattccttcacttttccattcagtgactcaaactcttcctttgacatcctgatctttccgctgaattttgaaatcgagagtcta |
56149643 |
T |
|
| Q |
201 |
ctttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgcttttgctgctttagcctcttccaaaacaagttctagctttttctctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149642 |
ctttgcacgtcggagataatcttcatctctttaatggctttttgttctgctgcttttgctgctttagcctcttccaaaacaagttctagctttttctctg |
56149543 |
T |
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| Q |
301 |
ct |
302 |
Q |
| |
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|| |
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|
| T |
56149542 |
ct |
56149541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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