View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3599_low_13 (Length: 305)
Name: NF3599_low_13
Description: NF3599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3599_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 53567807 - 53568073
Alignment:
| Q |
16 |
atgcatcagtaaccaaacaagtaatgtttttccctgtctctgccacagcttcatcaataacatgcttaaagttctcttgcatggccttaatgaagagaaa |
115 |
Q |
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| T |
53567807 |
atgcatcagtaaccaaacaagtaatgttcttccctgtctctgccacagcttcatcaataacatgcttaaagttctcttgcatggccttaatgaagagaaa |
53567906 |
T |
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| Q |
116 |
aattggttcacgtggattcccagaagatacgtaaccttctggtaacccatcatgaatattataatactttatgtttggaagaaactcgtttgacctagaa |
215 |
Q |
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| T |
53567907 |
aattggttcacgtggattcccagaagatacgtaaccttttggtaacccatcatgaacattataatactttatgtttggaagaaactcgtttgacctagaa |
53568006 |
T |
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| Q |
216 |
aataaagtatcatttgttgtggttgtgcagaagaatgaaaatgtaactttaggagcctctgtagcaa |
282 |
Q |
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| T |
53568007 |
aataaagtatcatttgttgtggttgtgcagaagaatgaaaatgtaactttaggagcctctgtagcaa |
53568073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 53581097 - 53581361
Alignment:
| Q |
16 |
atgcatcagtaaccaaacaagtaatgtttttccctgtctctgccacagcttcatcaataacatgcttaaagttctcttgcatggccttaatgaagagaaa |
115 |
Q |
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| T |
53581097 |
atgcatcagtaactaaacaagtaatgttcttccctgtctctgccacagctttaaccataacactcttatagttatctggcattgccttaatgaagatgaa |
53581196 |
T |
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| Q |
116 |
aattggttcacgtggattcccagaagatacgtaaccttctggtaacccatcatgaatattataatactttatgtttggaagaaac---------tcgttt |
206 |
Q |
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| T |
53581197 |
aatgggttcaagtgggtgtcctgaaggcacatacccttctggtaatccatcatgaacatcataatgctttatgttaggaagaaactcatcatagtctttt |
53581296 |
T |
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| Q |
207 |
gacctagaaaataaagtatcatttgttgtggttgtgcagaagaatgaaaatgtaactttaggagc |
271 |
Q |
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| T |
53581297 |
gatccagaaaataaagcggcatttgttctgcttgtgcacaagaatgaaaatgtaactttatgagc |
53581361 |
T |
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