View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3599_low_17 (Length: 292)
Name: NF3599_low_17
Description: NF3599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3599_low_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 2380688 - 2380961
Alignment:
| Q |
7 |
atgtcgaagaatatagagtcacatgaatgtacgaaccataaaatatgtaacaaccaatgacatgcctccacataagtgggaacacattgccatctcaata |
106 |
Q |
| |
|
|||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2380688 |
atgttgaataatttagagtcacatgaatggacgaaccataaaatatgtaacaaccaatgatatgcctccacataagtggcaacacattgccatctcaata |
2380787 |
T |
|
| Q |
107 |
aaacatcatcattttgatcctttgaaggacatacgtgtcaagccacgactgcactgtcggttgtatatcgttagttgaagcatcttttcatctcatagaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2380788 |
caacatcatcattttgatcctttgaaggacatacgtgtcaagccacgactgcactgtcggttgtatatagttagttgaagcatcttttcatctcatagaa |
2380887 |
T |
|
| Q |
207 |
tagatacctc---ttttatgtcttcttttccttactaggtaacgacttttcgaatgtttatgttggtagtttgt |
277 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2380888 |
tagatacctctttttttatgtcttcttttccttactaggtaacgacttttcgaatgtttatgttggtagtttgt |
2380961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 2359859 - 2359989
Alignment:
| Q |
7 |
atgtcgaagaatatagagtcacatgaatgtacgaaccataaaatatgtaacaaccaatgacatgcctccacataagtgggaacacattgccatctcaata |
106 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||| |||| |||||| ||||||| ||||||||||| |||| | ||||||||||||| | || |
|
|
| T |
2359859 |
atgttgaataatatagagtcacatgaatgtacgaaccattaaatgtgtaactaccaatgtcatgcctccac---cgtggaagcacattgccatctgagta |
2359955 |
T |
|
| Q |
107 |
aaacatcatcattttgatcctttgaaggacatac |
140 |
Q |
| |
|
| |||||||| | ||||||||||||||||| |
|
|
| T |
2359956 |
cgagttcatcattgtcgtcctttgaaggacatac |
2359989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 2360254 - 2360291
Alignment:
| Q |
141 |
gtgtcaagccacgactgcactgtcggttgtatatcgtt |
178 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2360254 |
gtgtcaagccacgactaaactgtcggttgtatatcgtt |
2360291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University