View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3599_low_19 (Length: 272)
Name: NF3599_low_19
Description: NF3599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3599_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 40878881 - 40879127
Alignment:
| Q |
1 |
taactagataacagttgtaatttaattagcaagtggaattacaaatgagtttcaaagaacaacaaagcctaaagaatctgatagaaaccttcgtgataaa |
100 |
Q |
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| T |
40878881 |
taactagataacagttgtaatttaattagcaagtggaattacaaaagagtttcaaagaacaacaaagcctaaagaatctgatagaaaccttcgtgataaa |
40878980 |
T |
|
| Q |
101 |
atagaattacaagagaatttcaacagtgttacattaaatgctctattttattatatccatatttatgtgcaaggctgttttaattgtcaacaaatggtat |
200 |
Q |
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| T |
40878981 |
atagaattacaagagaatttcaacagtgttacattaaatgctctgttttattatatccatatttat---------tgttttaattgtcaaaaaatggtat |
40879071 |
T |
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| Q |
201 |
caagagccaggttgaactaagatggcaacaaattcaagcacaggagtaacccaact |
256 |
Q |
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| T |
40879072 |
caagagccaggttgaactaagatggcaacaaattcaagcacaggagtaacccaact |
40879127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 256
Target Start/End: Complemental strand, 9624633 - 9624494
Alignment:
| Q |
119 |
ttcaacagtgttacattaaatgctctattttattatatccatatttatgtgcaaggctgttttaattgtcaacaaatggtatcaagagccaggttgaact |
218 |
Q |
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| T |
9624633 |
ttcaacaatgttacattaacagctcaattttattatatccatatttatcttgaaggttattttaattgctaacaaatggtatcaagagccgggttgaact |
9624534 |
T |
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| Q |
219 |
aagatggcaacaaattcaagcaca--ggagtaacccaact |
256 |
Q |
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| T |
9624533 |
aagatggctgcaatttcaagcacatgagagtaacccaact |
9624494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 17390063 - 17389988
Alignment:
| Q |
179 |
tttaattgtcaacaaatggtatcaagagccaggttgaactaagatggcaacaaattcaagcacaggagtaacccaa |
254 |
Q |
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| T |
17390063 |
tttaattgccaccaaatggtatcaagagccatgttgaactaagatggcagcaaattcaagcacacgagtaacccaa |
17389988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 9620200 - 9620090
Alignment:
| Q |
146 |
ttttattatatccatatttatgtgcaaggctgttttaattgtcaacaaatggtatcaagagccaggttgaactaagatggcaacaaattcaagcacagga |
245 |
Q |
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| T |
9620200 |
ttttattatatctatatttatctagaaggttgtattaattgccagtaaatggtatcaagagcctggttgaactaaaatggctgcaatttcaagtgcacga |
9620101 |
T |
|
| Q |
246 |
gtaacccaact |
256 |
Q |
| |
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|||||| |||| |
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| T |
9620100 |
gtaaccaaact |
9620090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 40253947 - 40253987
Alignment:
| Q |
181 |
taattgtcaacaaatggtatcaagagccaggttgaactaag |
221 |
Q |
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| T |
40253947 |
taattgccaacaaatggtatcaagagccacgttgaactaag |
40253987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 7419365 - 7419468
Alignment:
| Q |
153 |
atatccatatttatgtgcaaggctgttttaattgtcaacaaatggtatcaagagccaggttgaactaagatggcaacaaattcaagcacaggagtaaccc |
252 |
Q |
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|||||||||||||||| ||||||||||||||| ||| |||||||||||||||||| ||| |||||||||| | ||| |||||||||| | |||||| |
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| T |
7419365 |
atatccatatttatgtagaaggctgttttaattaccaataaatggtatcaagagccaagttaaactaagatgctagcaatttcaagcacatgtgtaacct |
7419464 |
T |
|
| Q |
253 |
aact |
256 |
Q |
| |
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|||| |
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|
| T |
7419465 |
aact |
7419468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 32240531 - 32240616
Alignment:
| Q |
171 |
aaggctgttttaattgtcaacaaatggtatcaagagccaggttgaactaagatggcaacaaattcaagcacaggagtaacccaact |
256 |
Q |
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||||||||||||||| ||| ||||||||||||||||| |||||||||||||| || ||| |||||||||| |||||||| |||| |
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| T |
32240531 |
aaggctgttttaattaccaagaaatggtatcaagagcctagttgaactaagatgccagcaatttcaagcacatgagtaacctaact |
32240616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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