View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3599_low_21 (Length: 247)
Name: NF3599_low_21
Description: NF3599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3599_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 35353374 - 35353595
Alignment:
| Q |
18 |
acgatacatattacataacacttttttgtggactgaaaatgatacataaaacttattattaatcaagttccaatatagataatgtacttattattataca |
117 |
Q |
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| T |
35353374 |
acgatacatattacataacatttttttgtggactcaaaatgatacataaaacttattattaatcaagttccaatatagataatgtacttattat---aca |
35353470 |
T |
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| Q |
118 |
tggaatcataatattgattggtggtt-agctagagaggggtcttagaatccaaggccaaaatggtgctgagattcattgggtatataacatctgtggaac |
216 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35353471 |
tggaatcataatattgattggtggtttagctagagagggatcttagaatccaaggccaaaatggtgctgagattcattgggtatataacatctgtggaac |
35353570 |
T |
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| Q |
217 |
ctgtcatgatttgcttaacgatcat |
241 |
Q |
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| T |
35353571 |
ctgtcatgatttgcttaacgatcat |
35353595 |
T |
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