View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3599_low_24 (Length: 205)

Name: NF3599_low_24
Description: NF3599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3599_low_24
NF3599_low_24
[»] chr5 (2 HSPs)
chr5 (20-188)||(32268228-32268396)
chr5 (89-188)||(41900758-41900857)
[»] chr8 (2 HSPs)
chr8 (31-186)||(27922867-27923022)
chr8 (131-185)||(18314967-18315021)
[»] chr4 (2 HSPs)
chr4 (146-183)||(1601177-1601214)
chr4 (146-183)||(21833652-21833689)
[»] chr3 (1 HSPs)
chr3 (131-184)||(514008-514061)
[»] chr1 (1 HSPs)
chr1 (147-187)||(19467792-19467832)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 32268396 - 32268228
Alignment:
Q  20 aatctctcttatcattcctacatcgatgacgaatttattctccacttgtttgaaagctgtaagctgctcgaagaggccatcatgttgccatgtgttgaca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268396 aatctctcttatcattcctacatcgatgacgaatttattctccacttgtttgaaagctgtaagctgctcgaagaggccatcatgttgccatgtgttgaca 32268297  T
Q  120 taacctttgttggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttccaata 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268296 taacctttgttggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttccaata 32268228  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 41900758 - 41900857
Alignment:
Q  89 gaagaggccatcatgttgccatgtgttgacataacctttgttggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttccaata 188  Q
    |||||||||||| ||||| ||||| |||| | |||||||| |||| |||||  ||| |||||  |||||||||||||||||||| |||| ||||||||||    
T  41900758 gaagaggccatcttgttgacatgttttgatacaacctttgatggtcttgcttctgctctccgccagagaccaacattgaggtctttatcattttccaata 41900857  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 27923022 - 27922867
Alignment:
Q  31 tcattcctacatcgatgacgaatttattctccacttgtttgaaagctgtaagctgctcgaagaggccatcatgttgccatgtgttgacataacctttgtt 130  Q
    ||||||| ||||| ||||| |||   ||||||| |||||  |||| |||||| | ||||||||||| ||||||||||  ||| ||||||||||||||| |    
T  27923022 tcattccgacatcaatgacaaatcgcttctccatttgttcaaaagttgtaaggttctcgaagaggctatcatgttgcactgttttgacataacctttgat 27922923  T
Q  131 ggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttccaa 186  Q
    || |||||||| || || || ||||||||||| ||||||||| |||| ||||||||    
T  27922922 ggaattgctaaagctctgcgcgagagaccaaccttgaggtctttatcattttccaa 27922867  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 18314967 - 18315021
Alignment:
Q  131 ggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttcca 185  Q
    |||||||||  ||| ||||||||||||||||| ||||||||| ||||| ||||||    
T  18314967 ggtattgcttttgctctccgtgagagaccaactttgaggtctttatccatttcca 18315021  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 1601214 - 1601177
Alignment:
Q  146 ctccgtgagagaccaacattgaggtctgtatccttttc 183  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  1601214 ctccgtgagagaccaacattgaggtctttatccttttc 1601177  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 21833652 - 21833689
Alignment:
Q  146 ctccgtgagagaccaacattgaggtctgtatccttttc 183  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  21833652 ctccgtgagagaccaacattgagttctttatccttttc 21833689  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 514008 - 514061
Alignment:
Q  131 ggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttcc 184  Q
    |||||||||  ||| ||||||||||||||||||||||  ||| |||||||||||    
T  514008 ggtattgcttctgctctccgtgagagaccaacattgacctctatatccttttcc 514061  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 19467792 - 19467832
Alignment:
Q  147 tccgtgagagaccaacattgaggtctgtatccttttccaat 187  Q
    |||||||||||||||||||||||||| |||| |||| ||||    
T  19467792 tccgtgagagaccaacattgaggtctttatcgttttgcaat 19467832  T

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