View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3599_low_4 (Length: 401)
Name: NF3599_low_4
Description: NF3599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3599_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 10558544 - 10558170
Alignment:
| Q |
18 |
aaaacgatgcatacttactgaattcgagaaaaacatacattgcataatcaagatagttaaataacttaaattacataccattcctcccatggcatgtaca |
117 |
Q |
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| T |
10558544 |
aaaacaatgcatacttactgaattcgagaaaaacatacattgcataatcaagatagttaaataacttaaattacataccattcctcccatggcatgtaca |
10558445 |
T |
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| Q |
118 |
ccgcgcctatgacatgtcctaatgagaaggtctgagtagctcttcatgaagtgttgactcatgccaacttggacccgatccggtagcaacctatccggat |
217 |
Q |
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| T |
10558444 |
ccgcgcctatgacatgtcctaatgagaaggtctgagtagctcttcatgaagtgttgactcatgccaacttggacccgatccggtagcaacctatccggat |
10558345 |
T |
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| Q |
218 |
gagcatggaaggtcttaacataactgaaaatgtaatcccaacggccacagttgagaccaacagagtgatctctgagctcatacagaatttcatccatttg |
317 |
Q |
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| T |
10558344 |
gagcatggaaggtcttaacataactgaaaatgtaatcccaacggccacagttgagaccaacagagtgatctctgagctcatacagaatttcatccatttg |
10558245 |
T |
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| Q |
318 |
aaacactgcaggaagtgtttcaatcaaaactgtggctcttatgcttcctctttcaatgcctgtcatcttctctgc |
392 |
Q |
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| T |
10558244 |
aaacactgcaggaagtgtttcaatcaaaactgtggctcttatgcttcctctttcaatgcctgtcatcttctctgc |
10558170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 289 - 392
Target Start/End: Complemental strand, 10560372 - 10560270
Alignment:
| Q |
289 |
ctgagctcatacagaatttcatccatttgaaacactgcaggaagtgtttcaatcaaaactgtggctcttatgcttcctctttcaatgcctgtcatcttct |
388 |
Q |
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| T |
10560372 |
ctgagctcatacaaaatttcatccatttgaaacactgcaggaagtgtttcaatcagaacagcggctc-tatgcttcctcttttagtgcctgccaacttct |
10560274 |
T |
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| Q |
389 |
ctgc |
392 |
Q |
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|||| |
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| T |
10560273 |
ctgc |
10560270 |
T |
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