View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3599_low_6 (Length: 332)
Name: NF3599_low_6
Description: NF3599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3599_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 195 - 311
Target Start/End: Original strand, 1839742 - 1839859
Alignment:
| Q |
195 |
tacaactaaatattttcataaaccgaacgagtttaactggattcatgaatta--catcaaatctcaattcggtacaacggtaacatttaatacaaataca |
292 |
Q |
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| T |
1839742 |
tacacctaattattttcataaacggaacgagtttaactggattcatgaattatacatcaaatctcaattcggtacaacggtaacatttaatacaaataca |
1839841 |
T |
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| Q |
293 |
tatattaagataacatcaa |
311 |
Q |
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|||||| |||||||||||| |
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| T |
1839842 |
tatatt-agataacatcaa |
1839859 |
T |
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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 1839561 - 1839640
Alignment:
| Q |
14 |
cgctaaaattcacagggagaggttgatgttcatttagatcttaagagattagtctccgcaattgcacgctaattatatta |
93 |
Q |
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|||||||||| | ||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| |||||| |
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| T |
1839561 |
cgctaaaatttatagggagaggttgacgttcatttagatcttaagagattagtctccacaattacacgctaatgatatta |
1839640 |
T |
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