View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3599_low_8 (Length: 323)
Name: NF3599_low_8
Description: NF3599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3599_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 21 - 310
Target Start/End: Original strand, 38868270 - 38868558
Alignment:
| Q |
21 |
agaaattaacctggcctcaaatctagtggctttgaatccttcaatatgtcaaagttatcttctagtcttatatagactttcctctcaaagacattcctac |
120 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38868270 |
agaaattaacctggtctcaaatctagtggctttgaatccttcaatatgtcaaagttatcttctagtcttatatagactttcctctcaaagacattcctat |
38868369 |
T |
|
| Q |
121 |
agtcttccaaagtacttttgattatggtaaaagcatataactgttctaatttgtgaacatcttcctcgaaactgatcatggtatagtcctcttcaactgt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38868370 |
agtcttccaaagtacttttgattatggtaaaagcatataactgttctaatttgtgaacatcttcctcgaaactgatcatggtatagtcctcttcaactgt |
38868469 |
T |
|
| Q |
221 |
acaccaagacaaatccagcaacctcgatttgtttagctttccaatctgagtaattgtcattcaattcccatcaatcaaacgtagaattct |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38868470 |
acaccaagacaaatccagcaacctcgatttgtttagctttccaatc-gagtaattgtcattcaattcccatcaatcaaacgtagaattct |
38868558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 38806821 - 38806751
Alignment:
| Q |
189 |
aaactgatcatggtatagtcctcttcaactgtacaccaagacaaatccagcaacctcgatttgtttagcttt |
260 |
Q |
| |
|
||||||||||||||| |||||||||| | |||||||| |||||||||||| |||||| |||||||||||||| |
|
|
| T |
38806821 |
aaactgatcatggta-agtcctcttcgattgtacaccgagacaaatccagaaacctcaatttgtttagcttt |
38806751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 38849438 - 38849502
Alignment:
| Q |
196 |
tcatggtatagtcctcttcaactgtacaccaagacaaatccagcaacctcgatttgtttagcttt |
260 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||||||||||| |||||| |||||||||||||| |
|
|
| T |
38849438 |
tcatggtattgtcctcttcaactatacactaagacaaatccaacaacctgaatttgtttagcttt |
38849502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University