View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3600_high_1 (Length: 257)
Name: NF3600_high_1
Description: NF3600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3600_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 595458 - 595695
Alignment:
| Q |
1 |
acaaataaaaaagaaggatgcaaatttagtacataacaggacaaggggaataatacataggctttgttattgctcaaactaattttagtactattttacc |
100 |
Q |
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| T |
595458 |
acaaataaaaaagaaggatgcaaatttagtacataacaggacaaggggaataatacataggctttgttattgttcaaactaattttagtactattttacc |
595557 |
T |
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| Q |
101 |
aatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtctactttagtttctacg |
200 |
Q |
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| T |
595558 |
aatcatagcaaaaatggattactgtcttgattgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtctactttagtttctacg |
595657 |
T |
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| Q |
201 |
tctattgataatgtgattatgaatattcaattgaatta |
238 |
Q |
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| T |
595658 |
tctattgataatgtgattatgaatattcaattgaatta |
595695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 4590038 - 4590129
Alignment:
| Q |
95 |
tttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtcta |
186 |
Q |
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| T |
4590038 |
tttaccaatcatagcagaaataaattcctgtcctgaatgctttacttgtttttagtttgttgacagaccagggagaattcgagagtcgtcta |
4590129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 4603679 - 4603770
Alignment:
| Q |
92 |
tattttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgt |
183 |
Q |
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| T |
4603679 |
tattttaccaatcatagcagaattaaattactatcctgaatgctttacttgtttttaatttgtcgacaggtcagtgagaattcgagaatcgt |
4603770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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