View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3600_high_1_N (Length: 357)
Name: NF3600_high_1_N
Description: NF3600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3600_high_1_N |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 54791084 - 54791433
Alignment:
| Q |
8 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaata |
107 |
Q |
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| T |
54791084 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagaccgacctagtaaatgaagcagaccaaata |
54791183 |
T |
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| Q |
108 |
cctcccccggctttggccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaact |
207 |
Q |
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| T |
54791184 |
cctcccccggctttggccgaagctgtcaaccaacctgtaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaact |
54791283 |
T |
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| Q |
208 |
ttaacgatgctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagactt |
307 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
54791284 |
ttaacgattctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagactt |
54791383 |
T |
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| Q |
308 |
caacaatgactggaatggtttcatgaatgcaagtgaatttgagaaatcct |
357 |
Q |
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| T |
54791384 |
caacaatgactggaatggtttcatgaatgcaagtgaatttgagaaatcct |
54791433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 357
Target Start/End: Complemental strand, 54778061 - 54777713
Alignment:
| Q |
8 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaata |
107 |
Q |
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| T |
54778061 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagaccgacctagtaaatgaagcagaccaaata |
54777962 |
T |
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| Q |
108 |
cctcccccggctttggccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaact |
207 |
Q |
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| T |
54777961 |
cctcccccggctttggccgaagctgtcaaccaacctgtaccgcaggttgagaattatgt-tggccatggacaggtataatcgttaacattaagagcaacc |
54777863 |
T |
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| Q |
208 |
ttaacgatgctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagactt |
307 |
Q |
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| T |
54777862 |
ttaacgattctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagactt |
54777763 |
T |
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| Q |
308 |
caacaatgactggaatggtttcatgaatgcaagtgaatttgagaaatcct |
357 |
Q |
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| T |
54777762 |
caacaatgactggaatggtttcaagaatgcaagtgaatttgagaaatcct |
54777713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 52283742 - 52284091
Alignment:
| Q |
8 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaata |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
52283742 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtttttggagactgacctagcaaatgaagcagaccaaata |
52283841 |
T |
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| Q |
108 |
cctcccccggctttggccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaact |
207 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
52283842 |
cctcccccgcctttgaccgaagctgtcaaccaacctgcaccacaggttgagaactatgtctggccatggacaggcataattgttaatattaagagcaaac |
52283941 |
T |
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| Q |
208 |
ttaacgatgctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagactt |
307 |
Q |
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| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52283942 |
tgaatgattctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagactt |
52284041 |
T |
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| Q |
308 |
caacaatgactggaatggtttcatgaatgcaagtgaatttgagaaatcct |
357 |
Q |
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| T |
52284042 |
caacaatgactggaatggtttcatgaatgcaagtgaatttgagaaatcct |
52284091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 354
Target Start/End: Original strand, 799020 - 799358
Alignment:
| Q |
10 |
gcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacc |
109 |
Q |
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|||||||||| |||||||||| | | || ||||| ||||||||||| ||||||||||||| |||| ||||||| ||| |||||||||||||||| |||| |
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| T |
799020 |
gcaaaggttcggcaaacagaagcacaaagcaaaaagcaaaccacctggctctggcaaagtttttgaggactgacttagcaaatgaagcagaccaagtacc |
799119 |
T |
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| Q |
110 |
tcccccggctttggccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaacttt |
209 |
Q |
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|| |||||||||| | | |||||| |||||||| || |||||||| || || ||||| |||||||||||| | || ||||| ||||| | |
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| T |
799120 |
tcgcccggctttgactgtagctgttgtccaacctg---tccaagttgagaactacgtttggccgtggacaggcatacttgtcaacat---aagcaaatca |
799213 |
T |
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| Q |
210 |
aacgatgctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttca |
309 |
Q |
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| ||| ||||||||| || |||||||||||| ||||||| ||| |||| ||| ||| ||||| ||||||||| || |||||| ||||||||| |
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| T |
799214 |
catgattctggatacttgcaaaaggaatttgctaagtacaaaccgttggctgttcatacgttcttgatggatggtaactccgtggctgttatagacttca |
799313 |
T |
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| Q |
310 |
acaatgactggaatggtttcatgaatgcaagtgaatttgagaaat |
354 |
Q |
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| T |
799314 |
acaatgactggaatgggtttatgaatgcaagtgagcttgagaaat |
799358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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