View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3601_high_10 (Length: 370)
Name: NF3601_high_10
Description: NF3601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3601_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 10 - 358
Target Start/End: Complemental strand, 35969424 - 35969077
Alignment:
| Q |
10 |
acaaagggcaatatagtcataaaataatgtatatatacttaattatcatctattgttcaggtaacttattatttctgctaagcctaacaacaatactcac |
109 |
Q |
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| T |
35969424 |
acaaagggcaatacagtcataaaataatgtatatatacttaattatcatc-attgttcaagtaactaattatttctgctaagcctaacaacaatactcac |
35969326 |
T |
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| Q |
110 |
aaagnnnnnnnnnnnnnnnnnnnnncaaagccgccgccaaacatatggaacatgaatctatcttgaagctctttgattctttctggtttcagtttaacat |
209 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35969325 |
aaagtttttcattcttctgattttccaaagccgccgccaaacatatggaacatgaatctatcttgaagctctttgattctttctggtttcagtttaacat |
35969226 |
T |
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| Q |
210 |
tttgaacagaaacacaacttcatcagtaacatcaacgtgttctgaacaaaatcttaaagattctcagaacaatgaaacatcatatgaaggaccaaaactc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35969225 |
tttgaacagaaacacaacttcatcagtaacatcaacgtgttctgaacaaaatcttaaagattctcagaacaatgaaacatcatatgaaggaccaaaactc |
35969126 |
T |
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| Q |
310 |
acacggatccgaactgttcataacagatccatgagtgaccaatctattg |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35969125 |
acacggatccgaactgttcataacagatccatgagtgaccaatctattg |
35969077 |
T |
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