View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3601_high_11 (Length: 344)
Name: NF3601_high_11
Description: NF3601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3601_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 136 - 268
Target Start/End: Complemental strand, 3245445 - 3245312
Alignment:
| Q |
136 |
attgaattgaaaggttaagagttttaaaaggatacacttattaaatc-aaatatgcaaatgaaaagtcatgaatgaataagaataaaaagtgatctttac |
234 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3245445 |
attgaattgaaaggctaagagttttaaaaggatacacttattaaaaccaaatatgcaaatgaaaagtcatgaatgaataagaataaaaagtgatctttac |
3245346 |
T |
|
| Q |
235 |
aattttcataacaaaaccgttaatgagaaacttt |
268 |
Q |
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| T |
3245345 |
aattttcataacaaaaccgttaatgagtaacttt |
3245312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 136 - 268
Target Start/End: Complemental strand, 29458893 - 29458760
Alignment:
| Q |
136 |
attgaattgaaaggttaagagttttaaaaggatacacttattaaatc-aaatatgcaaatgaaaagtcatgaatgaataagaataaaaagtgatctttac |
234 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29458893 |
attgaattgaaaggcttagagttttaaaaggatacacttattaaaaccaaatatacaaatgaaaagtcatgaatgaataagaataaaaagttatctttac |
29458794 |
T |
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| Q |
235 |
aattttcataacaaaaccgttaatgagaaacttt |
268 |
Q |
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| T |
29458793 |
aattttcataacaaaaccgttaatgagtaacttt |
29458760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 281
Target Start/End: Complemental strand, 2623565 - 2623474
Alignment:
| Q |
186 |
tatgcaaatgaaaagtcatgaatgaataagaataaaaagtgatctttacaattttcataacaaaaccgttaatgagaaactttataaaatttcttc |
281 |
Q |
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| T |
2623565 |
tatgcaaatgaaaggtc----atgaataagaataaaaagtgatcttcacaattttcataacaaaaccgttaatgagaagctttcaaaactttcttc |
2623474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 136 - 268
Target Start/End: Original strand, 8643235 - 8643368
Alignment:
| Q |
136 |
attgaattgaaaggttaagagttttaaaaggatacacttattaaatc-aaatatgcaaatgaaaagtcatgaatgaataagaataaaaagtgatctttac |
234 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8643235 |
attgaattgaaaggctaagagttttaaaaggatacacttattaaaaccaaatatgcaaatgaaaagtcatacatgaataagaataaaaagtgatctttac |
8643334 |
T |
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| Q |
235 |
aattttcataacaaaaccgttaatgagaaacttt |
268 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
8643335 |
aattttcataacaaaaccgttaatgagaaacttt |
8643368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 135 - 256
Target Start/End: Complemental strand, 5874634 - 5874512
Alignment:
| Q |
135 |
cattgaattgaaaggttaagagttttaaaaggatacacttattaaatc-aaatatgcaaatgaaaagtcatgaatgaataagaataaaaagtgatcttta |
233 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
5874634 |
cattgaagtgaaaggttaagagttttaaaaggatacacttattaaaaccaaatatgcaaatgaaaaatcatgaataaataagaataaaaagtgatcttta |
5874535 |
T |
|
| Q |
234 |
caattttcataacaaaaccgtta |
256 |
Q |
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|||||||||||||| || ||||| |
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| T |
5874534 |
caattttcataacataatcgtta |
5874512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 5874506 - 5874455
Alignment:
| Q |
278 |
cttcggatgtgtatatcttctatataaatgtgaagccattagactacttttt |
329 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
5874506 |
cttcggatgtgtatatcttctatataaatgtgaaaccattagactacctttt |
5874455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 184 - 268
Target Start/End: Complemental strand, 44218873 - 44218793
Alignment:
| Q |
184 |
aatatgcaaatgaaaagtcatgaatgaataagaataaaaagtgatctttacaattttcataacaaaaccgttaatgagaaacttt |
268 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44218873 |
aatatgcaaatgaaaggtcatgaat----aagaataaaaagtgatctttacaattttcataacaaaaccgttaatgagaagcttt |
44218793 |
T |
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